Paenibacillus herberti strain R33

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus herberti strain R33 is characterized by a single replicon, indicating a streamlined genetic structure that is typical of certain bacterial species. The genome of this strain is cataloged under the accession number NMUQ00000000.1. This accession serves as a reference for researchers studying the genetic makeup and functional capabilities of Paenibacillus herberti. As a member of the genus Paenibacillus, this strain is likely to exhibit traits associated with beneficial soil bacteria, including the ability to degrade organic matter and contribute to nutrient cycling. While specific metabolic capabilities or ecological roles of strain R33 are not detailed, the genus is known for its diverse ecological functions, often playing significant roles in agriculture and soil health. The presence of only one replicon suggests a potential adaptation to specific environmental conditions, which may enhance its survival and efficiency in nutrient utilization. This characteristic could imply a specialization in ecological niches where resource competition is high, allowing Paenibacillus herberti strain R33 to thrive. In summary, the genomic simplicity of Paenibacillus herberti strain R33, as indicated by its single replicon, may confer advantages in specific habitats, potentially influencing soil microbial dynamics and promoting sustainable agricultural practices. Further research could elucidate its specific roles in these environments, providing insights into its ecological significance.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus herberti
Strainstrain R33

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus herberti strain R33 R33_Scf_25, whole genome shotgun

Gene Summary

Adenine Count

1331337 bp

Thymine Count

1318958 bp

Guanine Count

1387543 bp

Cytosine Count

1369918 bp

Genome Length

5414232 bp

Protein-coding Genes

4615 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseCGZ75_16865Not AvailablePositive3770350 - 377092220695.9
transcriptional regulatorCGZ75_16870Not AvailablePositive3770874 - 37710958152.8
trna dihydrouridine synthase dusbCGZ75_16875Not AvailablePositive3771113 - 377210836808.0
transcription elongation factor greaCGZ75_16880Not AvailablePositive3772390 - 377286617548.1
lysine--trna ligaseCGZ75_16885Not AvailablePositive3772980 - 377447056542.7
gtp-binding proteinCGZ75_16905Not AvailablePositive3780131 - 378128842953.5
imp dehydrogenaseCGZ75_16910Not AvailablePositive3781441 - 378289852299.2
d-alanyl-d-alanine carboxypeptidaseCGZ75_16915Not AvailablePositive3783142 - 378452149198.3
pyridoxal 5'-phosphate synthase lyase subunit pdxsCGZ75_16920Not AvailablePositive3784620 - 378550131576.3
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtCGZ75_16925Not AvailablePositive3785550 - 378614621522.0

Displaying genes 3311 – 3320 of 4744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.