Zobellella denitrificans strain ZD1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Aeromonadales

Family

Aeromonadaceae

Genus

Zobellella

Description

Zobellella denitrificans strain ZD1 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number NMUO00000000.1, which provides a unique identifier for its genomic data. Zobellella denitrificans is known for its ability to perform denitrification, a critical process in the nitrogen cycle where nitrate is reduced to nitrogen gas, thus helping in the mitigation of nitrogen pollution in various environments. This metabolic capability positions the strain as a potential candidate for bioremediation applications, particularly in areas affected by excess nitrates from agricultural runoff or wastewater. Furthermore, understanding the genomic features of Z. denitrificans strain ZD1 can shed light on the genetic basis for its denitrification pathways and its ecological roles. By studying the genomic data associated with strain ZD1, researchers can explore the metabolic networks that enable this bacterium to thrive in environments rich in nitrogen compounds. This insight could lead to improved strategies for managing nitrogen levels in ecosystems, ultimately contributing to environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusZobellella
SpeciesZobellella denitrificans
Strainstrain ZD1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zobellella denitrificans strain ZD1 NODE_220, whole genome shotgun

Gene Summary

Adenine Count

733694 bp

Thymine Count

733927 bp

Guanine Count

1288882 bp

Cytosine Count

1295194 bp

Genome Length

4051699 bp

Protein-coding Genes

3654 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
orotate phosphoribosyltransferaseCGX12_14980Not AvailableNegative3137725 - 313836623372.1
ribonuclease phCGX12_14985Not AvailableNegative3138389 - 313911425881.2
yicc family proteinCGX12_14990Not AvailablePositive3139274 - 314013732806.6
cytochrome p450CGX12_14995Not AvailableNegative3140304 - 314145542957.3
methyl-accepting chemotaxis proteinCGX12_15000Not AvailablePositive3141863 - 314382171562.4
guanylate kinaseCGX12_15005Not AvailablePositive3144076 - 314470523580.8
dna-directed rna polymerase subunit omegaCGX12_15010Not AvailablePositive3144755 - 314503010006.8
bifunctional gtp diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphataseCGX12_15015Not AvailablePositive3145134 - 314725179764.8
lysophospholipaseCGX12_15020Not AvailablePositive3147371 - 314841138469.4
sugar/pyridoxal phosphate phosphatase yiglCGX12_15025Not AvailablePositive3148447 - 314924129630.6

Displaying genes 2971 – 2980 of 3771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.