Zobellella denitrificans strain ZD1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Aeromonadales

Family

Aeromonadaceae

Genus

Zobellella

Description

Zobellella denitrificans strain ZD1 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number NMUO00000000.1, which provides a unique identifier for its genomic data. Zobellella denitrificans is known for its ability to perform denitrification, a critical process in the nitrogen cycle where nitrate is reduced to nitrogen gas, thus helping in the mitigation of nitrogen pollution in various environments. This metabolic capability positions the strain as a potential candidate for bioremediation applications, particularly in areas affected by excess nitrates from agricultural runoff or wastewater. Furthermore, understanding the genomic features of Z. denitrificans strain ZD1 can shed light on the genetic basis for its denitrification pathways and its ecological roles. By studying the genomic data associated with strain ZD1, researchers can explore the metabolic networks that enable this bacterium to thrive in environments rich in nitrogen compounds. This insight could lead to improved strategies for managing nitrogen levels in ecosystems, ultimately contributing to environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusZobellella
SpeciesZobellella denitrificans
Strainstrain ZD1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zobellella denitrificans strain ZD1 NODE_220, whole genome shotgun

Gene Summary

Adenine Count

733694 bp

Thymine Count

733927 bp

Guanine Count

1288882 bp

Cytosine Count

1295194 bp

Genome Length

4051699 bp

Protein-coding Genes

3654 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylacetic acid degradation operon negative regulatory protein paaxCGX12_10425Not AvailableNegative2212063 - 221298934443.6
phenylacetate--coa ligaseCGX12_10430Not AvailableNegative2213127 - 221442247755.4
3-oxoadipyl-coa thiolaseCGX12_10435Not AvailableNegative2214447 - 221565542366.1
phenylacetic acid degradation protein paadCGX12_10440Not AvailableNegative2215648 - 221609416306.3
3-hydroxyacyl-coa dehydrogenaseCGX12_10445Not AvailableNegative2216087 - 221758953520.6
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseCGX12_10455Not AvailablePositive2217938 - 221836415211.4
hypothetical proteinCGX12_10460Not AvailablePositive2218459 - 221874310313.3
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseCGX12_10465Not AvailablePositive2218763 - 221988139902.1
histidine--trna ligaseCGX12_10470Not AvailablePositive2219925 - 222120247154.7
hypothetical proteinCGX12_10475Not AvailablePositive2221203 - 222184723080.0

Displaying genes 2081 – 2090 of 3771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.