Zobellella denitrificans strain ZD1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Aeromonadales

Family

Aeromonadaceae

Genus

Zobellella

Description

Zobellella denitrificans strain ZD1 is characterized by having a single replicon, indicating a streamlined genomic structure. The strain is cataloged under the accession number NMUO00000000.1, which provides a unique identifier for its genomic data. Zobellella denitrificans is known for its ability to perform denitrification, a critical process in the nitrogen cycle where nitrate is reduced to nitrogen gas, thus helping in the mitigation of nitrogen pollution in various environments. This metabolic capability positions the strain as a potential candidate for bioremediation applications, particularly in areas affected by excess nitrates from agricultural runoff or wastewater. Furthermore, understanding the genomic features of Z. denitrificans strain ZD1 can shed light on the genetic basis for its denitrification pathways and its ecological roles. By studying the genomic data associated with strain ZD1, researchers can explore the metabolic networks that enable this bacterium to thrive in environments rich in nitrogen compounds. This insight could lead to improved strategies for managing nitrogen levels in ecosystems, ultimately contributing to environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusZobellella
SpeciesZobellella denitrificans
Strainstrain ZD1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zobellella denitrificans strain ZD1 NODE_220, whole genome shotgun

Gene Summary

Adenine Count

733694 bp

Thymine Count

733927 bp

Guanine Count

1288882 bp

Cytosine Count

1295194 bp

Genome Length

4051699 bp

Protein-coding Genes

3654 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate--trna ligaseCGX12_05980Not AvailableNegative1290091 - 129187266027.2
hypothetical proteinCGX12_05985Not AvailablePositive1292168 - 129301031350.9
carboxy-s-adenosyl-l-methionine synthase cmoaCGX12_05990Not AvailablePositive1293215 - 129394326913.5
trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmobCGX12_05995Not AvailablePositive1293940 - 129495038626.3
atp-dependent zn proteaseCGX12_06000Not AvailablePositive1294943 - 129571328468.8
gonadoliberin iiiCGX12_06005Not AvailablePositive1295722 - 129723655976.2
alpha-l-glutamate ligase-like proteinCGX12_06010Not AvailablePositive1297229 - 129820035836.8
ribosomal large subunit pseudouridine synthase bCGX12_06015Not AvailableNegative1298422 - 129934534803.1
threonylcarbamoyl-amp synthaseCGX12_06020Not AvailableNegative1299355 - 129997523085.0
phosphataseCGX12_06025Not AvailableNegative1299996 - 130082030068.8

Displaying genes 1211 – 1220 of 3771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.