Pseudomonas sp. IB20

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. IB20 is characterized by having a single replicon, which suggests a streamlined genomic structure that may enhance its adaptability under various environmental conditions. The strain is cataloged under the accession number NMRE00000000.1, indicating its significance in the context of microbial research. While specific metabolic capabilities and ecological roles of Pseudomonas sp. IB20 are not provided, the genus Pseudomonas is well-known for its remarkable versatility and ability to thrive in diverse habitats, including soil, water, and as plant-associated microorganisms. This versatility often allows them to participate in biogeochemical cycles and contribute to nutrient cycling within their ecosystems. In general, members of the Pseudomonas genus are recognized for their potential in bioremediation, as they can degrade a variety of pollutants. Given that Pseudomonas sp. IB20 is a member of this genus, it may possess similar capabilities, contributing to the breakdown of environmental contaminants. The presence of a single replicon may also suggest a potential for rapid adaptation, as a streamlined genome can facilitate efficient replication and expression of genes crucial for survival in fluctuating environments. This trait could provide insights into the ecological resilience of Pseudomonas sp. IB20, supporting its role in maintaining ecosystem health and function in its native habitat. Overall, Pseudomonas sp. IB20 exemplifies the adaptive nature of the Pseudomonas genus, reflecting its importance in ecological dynamics and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas gelidaquae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. IB20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. IB20 NODE_216_length_1044_cov_2.81587, whole

Gene Summary

Adenine Count

1302599 bp

Thymine Count

1303749 bp

Guanine Count

1942324 bp

Cytosine Count

1935767 bp

Genome Length

6484439 bp

Protein-coding Genes

5556 genes

Non-Coding Genes

220 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
multi-copper polyphenol oxidoreductaseB7453_01510Not AvailablePositive305253 - 30597825997.9
atp-dependent chaperone clpbB7453_01515Not AvailablePositive306126 - 30869095344.6
Trna-asnNot AvailableNot AvailablePositive308994 - 309069Not Available
Trna-proNot AvailableNot AvailablePositive309080 - 309156Not Available
Trna-lysNot AvailableNot AvailablePositive309162 - 309237Not Available
Trna-proNot AvailableNot AvailablePositive309332 - 309408Not Available
cysteine hydrolaseB7453_01540Not AvailablePositive309573 - 31030725987.6
lysr family transcriptional regulatorB7453_01545Not AvailablePositive310357 - 31122631617.7
nad(p)/fad-dependent oxidoreductaseB7453_01550Not AvailableNegative311286 - 31258446871.6
duf3094 domain-containing proteinB7453_01555Not AvailableNegative312645 - 3128186590.17

Displaying genes 501 – 510 of 5776 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.