Siphonobacter sp. BAB-5385

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter sp. BAB-5385 is a Gram-negative, rod-shaped bacterium characterized by having a single replicon. This organism is part of the Siphonobacter genus, which is known for its unique ecological roles, particularly in aquatic environments. The designation "sp." indicates that it is a species within this genus that has not been fully classified or described in detail. The accession number for Siphonobacter sp. BAB-5385 is NMPS00000000.1, which serves as a reference for genomic data associated with this strain. This accession can be utilized by researchers to access genomic sequences and related information, facilitating further studies into its biological characteristics and potential applications. The Gram-negative nature of Siphonobacter sp. BAB-5385 suggests that it possesses an outer membrane containing lipopolysaccharides, which can contribute to its environmental resilience and interactions with other microorganisms. The rod shape may influence its motility and ability to thrive in various ecological niches, particularly in sediment and water columns where it may play a role in nutrient cycling. In summary, Siphonobacter sp. BAB-5385’s traits, including its Gram-negative status, rod shape, and single replicon, indicate its potential significance in microbial ecology. Understanding its role could provide insights into the dynamics of microbial communities and nutrient cycling processes in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter sp. BAB-5385
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter sp. BAB-5385 NODE_732_length_1177_cov_46.8689, whole

Gene Summary

Adenine Count

1680792 bp

Thymine Count

1674358 bp

Guanine Count

1590867 bp

Cytosine Count

1586315 bp

Genome Length

6532332 bp

Protein-coding Genes

5049 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s-adenosylmethionine trna ribosyltransferaseBWI93_18290Not AvailableNegative4377098 - 437830345719.0
hypothetical proteinBWI93_18295Not AvailableNegative4378310 - 437876817000.2
atp:cob(i)alamin adenosyltransferaseBWI93_18300Not AvailablePositive4379098 - 437964920804.9
branched chain amino acid aminotransferaseBWI93_18305Not AvailablePositive4379711 - 438077539639.4
hypothetical proteinBWI93_18310Not AvailablePositive4380788 - 438182839693.8
alpha/beta hydrolaseBWI93_18315Not AvailableNegative4381869 - 438260927595.9
hypothetical proteinBWI93_18320Not AvailableNegative4382735 - 438337923080.9
atp-dependent protease atp-binding subunit clpxBWI93_18325Not AvailableNegative4383548 - 438480147020.9
hypothetical proteinBWI93_18330Not AvailableNegative4384848 - 438591841085.0
atp-dependent clp protease proteolytic subunitBWI93_18335Not AvailableNegative4386146 - 438684125622.7

Displaying genes 3471 – 3480 of 5143 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.