Siphonobacter sp. BAB-5385

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter sp. BAB-5385 is a Gram-negative, rod-shaped bacterium characterized by having a single replicon. This organism is part of the Siphonobacter genus, which is known for its unique ecological roles, particularly in aquatic environments. The designation "sp." indicates that it is a species within this genus that has not been fully classified or described in detail. The accession number for Siphonobacter sp. BAB-5385 is NMPS00000000.1, which serves as a reference for genomic data associated with this strain. This accession can be utilized by researchers to access genomic sequences and related information, facilitating further studies into its biological characteristics and potential applications. The Gram-negative nature of Siphonobacter sp. BAB-5385 suggests that it possesses an outer membrane containing lipopolysaccharides, which can contribute to its environmental resilience and interactions with other microorganisms. The rod shape may influence its motility and ability to thrive in various ecological niches, particularly in sediment and water columns where it may play a role in nutrient cycling. In summary, Siphonobacter sp. BAB-5385’s traits, including its Gram-negative status, rod shape, and single replicon, indicate its potential significance in microbial ecology. Understanding its role could provide insights into the dynamics of microbial communities and nutrient cycling processes in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter sp. BAB-5385
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter sp. BAB-5385 NODE_732_length_1177_cov_46.8689, whole

Gene Summary

Adenine Count

1680792 bp

Thymine Count

1674358 bp

Guanine Count

1590867 bp

Cytosine Count

1586315 bp

Genome Length

6532332 bp

Protein-coding Genes

5049 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
laci family transcriptional regulatorBWI93_17305Not AvailableNegative4131225 - 413224737857.5
rna polymerase sigma-70 factorBWI93_17310Not AvailablePositive4132544 - 413315524056.8
duf2279 domain-containing proteinBWI93_17315Not AvailableNegative4133242 - 413412633363.6
hypothetical proteinBWI93_17320Not AvailableNegative4134208 - 413626576941.3
3-oxoacyl-[acyl-carrier-protein] reductaseBWI93_17325Not AvailableNegative4136405 - 413715126296.8
hypothetical proteinBWI93_17330Not AvailableNegative4137261 - 413918073328.3
dna mismatch repair protein mutsBWI93_17335Not AvailablePositive4139371 - 414031235653.9
hypothetical proteinBWI93_17340Not AvailablePositive4140478 - 414121527509.2
hypothetical proteinBWI93_17345Not AvailablePositive4141146 - 414192228420.2
flagellar motor protein motbBWI93_17355Not AvailablePositive4142817 - 414438258691.3

Displaying genes 3281 – 3290 of 5143 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.