Pseudorhodobacter sp. PARRP1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pseudorhodobacter

Description

Pseudorhodobacter sp. PARRP1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. The organism is part of the diverse Pseudorhodobacter genus, which is known for its various ecological roles, particularly in marine environments. With its Gram-negative classification, Pseudorhodobacter sp. PARRP1 possesses a distinctive cell wall structure that includes a thin peptidoglycan layer surrounded by an outer membrane, which typically contains lipopolysaccharides. This structural feature is significant for its interactions with the environment, influencing its susceptibility to antibiotics and its ability to thrive in different ecological niches. The organism has been referenced with the accession number NKIU00000000.1, which allows for further investigation into its genomic features and potential biotechnological applications. The single replicon indicates a streamlined genetic architecture, which may confer advantages in replication speed and adaptability. In terms of ecological insight, the presence of Pseudorhodobacter sp. PARRP1 in various environments, particularly aquatic ecosystems, suggests it may play a role in nutrient cycling and microbial community dynamics. Its ability to adapt to specific environments likely allows it to participate in crucial ecological processes, such as decomposition and organic matter turnover, contributing to the overall health of its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPseudorhodobacter
SpeciesPseudorhodobacter sp. PARRP1
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudorhodobacter sp. PARRP1 NODE_31854, whole genome shotgun

Gene Summary

Adenine Count

824940 bp

Thymine Count

837035 bp

Guanine Count

1366108 bp

Cytosine Count

1323167 bp

Genome Length

4351260 bp

Protein-coding Genes

4035 genes

Non-Coding Genes

131 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
agamatine deiminaseCFE33_10555Not AvailableNegative2180998 - 218209239026.9
hypothetical proteinCFE33_10560Not AvailableNegative2182106 - 218242311216.7
agmatine deiminaseCFE33_10565Not AvailableNegative2182420 - 218339735495.0
gcv operon regulatorCFE33_10570Not AvailablePositive2183550 - 218450335164.8
hypothetical proteinCFE33_10580Not AvailablePositive2184965 - 218536313892.6
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbCFE33_10590Not AvailablePositive2186271 - 218705627703.4
coa-binding proteinCFE33_10595Not AvailablePositive2187344 - 218777815366.5
hypothetical proteinCFE33_10600Not AvailableNegative2187818 - 21880548375.99
eama family transporterCFE33_10605Not AvailableNegative2188045 - 218891730202.0
imidazoleglycerol-phosphate dehydrataseCFE33_10610Not AvailableNegative2188981 - 218937314053.0

Displaying genes 2221 – 2230 of 4166 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.