Pseudomonas sp. PGPPP1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP1 is characterized by having a single replicon, which is significant for its genetic structure and stability. The genome of this strain is cataloged under the accession number NKIG00000000.1, allowing for easy reference in genomic databases. As a member of the Pseudomonas genus, PGPPP1 is likely to possess traits commonly associated with this group, such as adaptability to diverse environments and a capacity for metabolic versatility. Pseudomonas species are often recognized for their roles in bioremediation and plant growth promotion, which can be tied to their ability to degrade various organic compounds and their interactions with plants. From a biological and ecological perspective, the single replicon of Pseudomonas sp. PGPPP1 may suggest a streamlined genetic regulation, potentially enhancing its adaptability to changing environments. This could be advantageous in ecological niches where rapid responses to environmental shifts are necessary for survival. The traits of Pseudomonas sp. PGPPP1 may contribute to ecological processes, such as nutrient cycling and the promotion of plant health, thereby playing a role in maintaining ecosystem balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP1 NODE_16120, whole genome shotgun

Gene Summary

Adenine Count

1366985 bp

Thymine Count

1372451 bp

Guanine Count

2062724 bp

Cytosine Count

2065796 bp

Genome Length

6867956 bp

Protein-coding Genes

6158 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-dehydro-4-deoxyglucarate dehydrataseCFE47_24755Not AvailablePositive5437972 - 543888332645.3
aldehyde dehydrogenase family proteinCFE47_24760Not AvailablePositive5438938 - 544038351201.1
mfs transporterCFE47_24765Not AvailablePositive5440482 - 544184649290.9
galactarate dehydrataseCFE47_24770Not AvailablePositive5441858 - 544341156252.1
malate transporterCFE47_24775Not AvailablePositive5443586 - 544452733197.6
4-carboxymuconolactone decarboxylaseCFE47_24780Not AvailableNegative5444629 - 544501213978.7
conjugal transfer protein trarCFE47_24785Not AvailableNegative5445009 - 544606437228.3
septal ring lytic transglycosylase rlpa family lipoproteinCFE47_24790Not AvailableNegative5446114 - 544648513129.7
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit bCFE47_24795Not AvailableNegative5446644 - 544808952906.2
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit aCFE47_24800Not AvailableNegative5448100 - 544955151781.6

Displaying genes 4871 – 4880 of 6225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.