Pseudomonas sp. PGPPP1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP1 is characterized by having a single replicon, which is significant for its genetic structure and stability. The genome of this strain is cataloged under the accession number NKIG00000000.1, allowing for easy reference in genomic databases. As a member of the Pseudomonas genus, PGPPP1 is likely to possess traits commonly associated with this group, such as adaptability to diverse environments and a capacity for metabolic versatility. Pseudomonas species are often recognized for their roles in bioremediation and plant growth promotion, which can be tied to their ability to degrade various organic compounds and their interactions with plants. From a biological and ecological perspective, the single replicon of Pseudomonas sp. PGPPP1 may suggest a streamlined genetic regulation, potentially enhancing its adaptability to changing environments. This could be advantageous in ecological niches where rapid responses to environmental shifts are necessary for survival. The traits of Pseudomonas sp. PGPPP1 may contribute to ecological processes, such as nutrient cycling and the promotion of plant health, thereby playing a role in maintaining ecosystem balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP1 NODE_16120, whole genome shotgun

Gene Summary

Adenine Count

1366985 bp

Thymine Count

1372451 bp

Guanine Count

2062724 bp

Cytosine Count

2065796 bp

Genome Length

6867956 bp

Protein-coding Genes

6158 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
agmatine deiminaseCFE47_24140Not AvailableNegative5300365 - 530146539980.1
abc transporter substrate-binding proteinCFE47_24145Not AvailableNegative5301608 - 530268439455.4
n-carbamoylputrescine amidaseCFE47_24150Not AvailableNegative5302681 - 530356232444.8
peptidyl-arginine deiminaseCFE47_24155Not AvailableNegative5303559 - 530460837767.8
lysr family transcriptional regulatorCFE47_24160Not AvailablePositive5304743 - 530561532375.6
glutathione s-transferaseCFE47_24165Not AvailablePositive5305654 - 530625021993.6
3-oxoacyl-acp reductaseCFE47_24175Not AvailableNegative5306849 - 530761626995.5
galactose-1-epimeraseCFE47_24180Not AvailablePositive5307754 - 530890241440.7
arabinose abc transporter permeaseCFE47_24185Not AvailableNegative5309015 - 530998333870.0
l-arabinose abc transporter atp-binding protein aragCFE47_24190Not AvailableNegative5309993 - 531149554055.9

Displaying genes 4751 – 4760 of 6225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.