Pseudomonas sp. PGPPP2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP2 is characterized by possessing a single replicon, which may indicate a streamlined genomic structure that could impact its adaptability and survival in various environments. The genomic data for this strain is accessible through the accession number NKIF00000000.1, providing a basis for further research into its genetic and biochemical properties. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, often including soil, water, and plant-associated environments. This adaptability is particularly pertinent in the context of bioremediation, where certain strains can degrade pollutants or synthesize beneficial compounds. The single replicon in PGPPP2 may suggest a specialization that allows for efficient replication and resource allocation, potentially enhancing its ecological role in nutrient cycling or biodegradation processes. In conclusion, Pseudomonas sp. PGPPP2 showcases a genomic trait of having one replicon, which could be indicative of its ecological adaptations. Understanding the genetic basis of this strain may provide insights into its potential applications in environmental microbiology, particularly in bioremediation strategies to mitigate pollution. The availability of its genomic data supports future studies aimed at elucidating its metabolic capabilities and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP2 NODE_21691, whole genome shotgun

Gene Summary

Adenine Count

1218947 bp

Thymine Count

1224041 bp

Guanine Count

1811112 bp

Cytosine Count

1800459 bp

Genome Length

6054569 bp

Protein-coding Genes

5308 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine/betaine abc transporter substrate-binding proteinCFE48_17245Not AvailablePositive3786712 - 378762633097.8
sodium-independent anion transporterCFE48_17250Not AvailablePositive3787786 - 378935456163.6
shikimate dehydrogenaseCFE48_17255Not AvailableNegative3789355 - 379017629270.0
coproporphyrinogen iii oxidaseCFE48_17260Not AvailableNegative3790176 - 379110835293.3
quinone oxidoreductaseCFE48_17265Not AvailablePositive3791269 - 379224634143.7
trna threonylcarbamoyladenosine biosynthesis protein rimnCFE48_17270Not AvailableNegative3792327 - 379288420699.8
dna-protecting protein dpraCFE48_17275Not AvailableNegative3792960 - 379406338848.0
peptidoglycan-binding proteinCFE48_17280Not AvailableNegative3794127 - 379489427721.6
peptide deformylaseCFE48_17285Not AvailablePositive3795030 - 379553619358.5
methionyl-trna formyltransferaseCFE48_17290Not AvailablePositive3795606 - 379655933645.8

Displaying genes 3381 – 3390 of 5437 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.