Pseudomonas sp. PGPPP2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP2 is characterized by possessing a single replicon, which may indicate a streamlined genomic structure that could impact its adaptability and survival in various environments. The genomic data for this strain is accessible through the accession number NKIF00000000.1, providing a basis for further research into its genetic and biochemical properties. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, often including soil, water, and plant-associated environments. This adaptability is particularly pertinent in the context of bioremediation, where certain strains can degrade pollutants or synthesize beneficial compounds. The single replicon in PGPPP2 may suggest a specialization that allows for efficient replication and resource allocation, potentially enhancing its ecological role in nutrient cycling or biodegradation processes. In conclusion, Pseudomonas sp. PGPPP2 showcases a genomic trait of having one replicon, which could be indicative of its ecological adaptations. Understanding the genetic basis of this strain may provide insights into its potential applications in environmental microbiology, particularly in bioremediation strategies to mitigate pollution. The availability of its genomic data supports future studies aimed at elucidating its metabolic capabilities and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP2 NODE_21691, whole genome shotgun

Gene Summary

Adenine Count

1218947 bp

Thymine Count

1224041 bp

Guanine Count

1811112 bp

Cytosine Count

1800459 bp

Genome Length

6054569 bp

Protein-coding Genes

5308 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fructose 1,6-bisphosphataseCFE48_12985Not AvailableNegative2911478 - 291248837106.4
hypothetical proteinCFE48_12990Not AvailableNegative2912598 - 291395048485.3
hypothetical proteinCFE48_12995Not AvailableNegative2913950 - 2917465125264.0
glycogen phosphorylaseCFE48_13000Not AvailableNegative2917623 - 292007391808.5
ykgj family cysteine cluster proteinCFE48_13005Not AvailablePositive2920313 - 292074716749.3
tol-pal system protein ybgfCFE48_13010Not AvailablePositive2921107 - 292194329298.2
7-carboxy-7-deazaguanine synthase queeCFE48_13015Not AvailablePositive2922108 - 292275524174.7
7-cyano-7-deazaguanine synthase quecCFE48_13020Not AvailablePositive2922757 - 292343423940.6
Trna-lysNot AvailableNot AvailablePositive2923498 - 2923573Not Available
nadph:quinone reductaseCFE48_13030Not AvailablePositive2923764 - 292434222036.0

Displaying genes 2601 – 2610 of 5437 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.