Pseudomonas sp. PGPPP2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP2 is characterized by possessing a single replicon, which may indicate a streamlined genomic structure that could impact its adaptability and survival in various environments. The genomic data for this strain is accessible through the accession number NKIF00000000.1, providing a basis for further research into its genetic and biochemical properties. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, often including soil, water, and plant-associated environments. This adaptability is particularly pertinent in the context of bioremediation, where certain strains can degrade pollutants or synthesize beneficial compounds. The single replicon in PGPPP2 may suggest a specialization that allows for efficient replication and resource allocation, potentially enhancing its ecological role in nutrient cycling or biodegradation processes. In conclusion, Pseudomonas sp. PGPPP2 showcases a genomic trait of having one replicon, which could be indicative of its ecological adaptations. Understanding the genetic basis of this strain may provide insights into its potential applications in environmental microbiology, particularly in bioremediation strategies to mitigate pollution. The availability of its genomic data supports future studies aimed at elucidating its metabolic capabilities and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP2 NODE_21691, whole genome shotgun

Gene Summary

Adenine Count

1218947 bp

Thymine Count

1224041 bp

Guanine Count

1811112 bp

Cytosine Count

1800459 bp

Genome Length

6054569 bp

Protein-coding Genes

5308 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short-chain dehydrogenaseCFE48_09010Not AvailableNegative1994459 - 199527128482.4
multidrug transporterCFE48_09015Not AvailableNegative1995286 - 199575017055.6
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomeraseCFE48_09020Not AvailableNegative1996209 - 199766053885.5
alginate o-acetyltransferaseCFE48_09025Not AvailableNegative1997809 - 199846522895.2
alginate o-acetyltransferaseCFE48_09030Not AvailableNegative1998482 - 199966944070.4
membrane-bound o-acyltransferase family proteinCFE48_09035Not AvailableNegative1999681 - 200121357906.8
mannuronate-specific alginate lyaseCFE48_09040Not AvailableNegative2001429 - 200253841907.8
alginate o-acetyltransferaseCFE48_09045Not AvailableNegative2002547 - 200399553530.4
right-handed parallel beta-helix repeat-containing proteinCFE48_09050Not AvailableNegative2004007 - 200557557648.1
transcriptional regulatorCFE48_09055Not AvailableNegative2005575 - 200705955158.9

Displaying genes 1821 – 1830 of 5437 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.