Pseudomonas sp. PGPPP2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP2 is characterized by possessing a single replicon, which may indicate a streamlined genomic structure that could impact its adaptability and survival in various environments. The genomic data for this strain is accessible through the accession number NKIF00000000.1, providing a basis for further research into its genetic and biochemical properties. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse ecological niches, often including soil, water, and plant-associated environments. This adaptability is particularly pertinent in the context of bioremediation, where certain strains can degrade pollutants or synthesize beneficial compounds. The single replicon in PGPPP2 may suggest a specialization that allows for efficient replication and resource allocation, potentially enhancing its ecological role in nutrient cycling or biodegradation processes. In conclusion, Pseudomonas sp. PGPPP2 showcases a genomic trait of having one replicon, which could be indicative of its ecological adaptations. Understanding the genetic basis of this strain may provide insights into its potential applications in environmental microbiology, particularly in bioremediation strategies to mitigate pollution. The availability of its genomic data supports future studies aimed at elucidating its metabolic capabilities and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP2 NODE_21691, whole genome shotgun

Gene Summary

Adenine Count

1218947 bp

Thymine Count

1224041 bp

Guanine Count

1811112 bp

Cytosine Count

1800459 bp

Genome Length

6054569 bp

Protein-coding Genes

5308 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-hydroxylating dioxygenase subunit alphaCFE48_08550Not AvailableNegative1892708 - 189400348812.3
protein gbcaCFE48_08555Not AvailableNegative1894060 - 18942577210.95
hybrid-cluster nad(p)-dependent oxidoreductaseCFE48_08560Not AvailablePositive1894288 - 189538840564.7
low specificity l-threonine aldolaseCFE48_08565Not AvailableNegative1896114 - 189715438029.9
conjugal transfer protein traxCFE48_08570Not AvailablePositive1897245 - 189797326632.6
serine hydroxymethyltransferaseCFE48_08575Not AvailablePositive1898212 - 189946544658.2
sarcosine oxidase subunit beta family proteinCFE48_08580Not AvailablePositive1899488 - 190073845168.9
sarcosine oxidase subunit delta family proteinCFE48_08585Not AvailablePositive1900754 - 190105611594.5
sarcosine oxidase subunit alpha family proteinCFE48_08590Not AvailablePositive1901053 - 1904070109387.0
sarcosine oxidase subunit gamma family proteinCFE48_08595Not AvailablePositive1904200 - 190483222740.1

Displaying genes 1731 – 1740 of 5437 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.