Pseudomonas sp. PGPPP4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP4 is characterized by having a single replicon, which is significant for its genomic organization. The accession number for this strain is NKID00000000.1, providing a reference for researchers seeking to retrieve genomic data related to this specific organism. Pseudomonas species are known for their metabolic versatility and environmental adaptability. While specific phenotypic traits and ecological roles for PGPPP4 are not provided, the genus Pseudomonas is generally recognized for its ability to thrive in diverse environments, including soil, water, and within various host organisms. This adaptability often makes Pseudomonas a crucial player in biogeochemical cycles and a useful organism in bioremediation efforts. The presence of a single replicon in Pseudomonas sp. PGPPP4 could suggest a streamlined genetic architecture, potentially contributing to its efficiency in replication and adaptability. This trait may also facilitate the organism's ability to respond to environmental changes rapidly, a hallmark of many Pseudomonas species. In conclusion, while specific traits of Pseudomonas sp. PGPPP4 are limited, the understanding of its single replicon structure positions it within a genus renowned for ecological versatility and adaptability. Such traits may offer insights into its potential roles in nutrient cycling and bioremediation processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP4 NODE_8869, whole genome shotgun

Gene Summary

Adenine Count

828141 bp

Thymine Count

830144 bp

Guanine Count

1620587 bp

Cytosine Count

1605551 bp

Genome Length

4884423 bp

Protein-coding Genes

4381 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rossman fold protein, tigr00730 familyCFE50_04720Not AvailableNegative1041930 - 104250820592.0
abc transporter substrate-binding proteinCFE50_04730Not AvailableNegative1043431 - 104422827722.6
gluconolactonaseCFE50_04735Not AvailableNegative1044254 - 104518934626.7
amidohydrolaseCFE50_04740Not AvailableNegative1045216 - 104615734499.5
3-oxoacyl-acp reductaseCFE50_04745Not AvailableNegative1046215 - 104703328008.5
carboxymuconolactone decarboxylaseCFE50_04750Not AvailableNegative1047044 - 104760420837.1
c4-dicarboxylate transporter dctaCFE50_04755Not AvailableNegative1047617 - 104896647103.6
transcriptional regulatorCFE50_04760Not AvailablePositive1049127 - 105005334068.4
iclr family transcriptional regulatorCFE50_04765Not AvailableNegative1050059 - 105089229966.2
enoyl-coa hydrataseCFE50_04770Not AvailablePositive1050978 - 105179028634.4

Displaying genes 951 – 960 of 4452 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.