Pseudomonas sp. PGPPP4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP4 is characterized by having a single replicon, which is significant for its genomic organization. The accession number for this strain is NKID00000000.1, providing a reference for researchers seeking to retrieve genomic data related to this specific organism. Pseudomonas species are known for their metabolic versatility and environmental adaptability. While specific phenotypic traits and ecological roles for PGPPP4 are not provided, the genus Pseudomonas is generally recognized for its ability to thrive in diverse environments, including soil, water, and within various host organisms. This adaptability often makes Pseudomonas a crucial player in biogeochemical cycles and a useful organism in bioremediation efforts. The presence of a single replicon in Pseudomonas sp. PGPPP4 could suggest a streamlined genetic architecture, potentially contributing to its efficiency in replication and adaptability. This trait may also facilitate the organism's ability to respond to environmental changes rapidly, a hallmark of many Pseudomonas species. In conclusion, while specific traits of Pseudomonas sp. PGPPP4 are limited, the understanding of its single replicon structure positions it within a genus renowned for ecological versatility and adaptability. Such traits may offer insights into its potential roles in nutrient cycling and bioremediation processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP4 NODE_8869, whole genome shotgun

Gene Summary

Adenine Count

828141 bp

Thymine Count

830144 bp

Guanine Count

1620587 bp

Cytosine Count

1605551 bp

Genome Length

4884423 bp

Protein-coding Genes

4381 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (n6-adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase tsaeCFE50_01935Not AvailablePositive423871 - 42433216535.7
n-acetylmuramoyl-l-alanine amidaseCFE50_01940Not AvailablePositive424371 - 42580151241.5
dna mismatch repair protein mutlCFE50_01945Not AvailablePositive425794 - 42769269429.7
trna (adenosine(37)-n6)-dimethylallyltransferase miaaCFE50_01950Not AvailablePositive427735 - 42871535503.9
rna-binding protein hfqCFE50_01955Not AvailablePositive428803 - 4290489118.96
gtpase hflxCFE50_01960Not AvailablePositive429069 - 43037349266.9
protease modulator hflkCFE50_01965Not AvailablePositive430472 - 43165943041.4
protease modulator hflcCFE50_01970Not AvailablePositive431659 - 43252832967.5
atp phosphoribosyltransferase regulatory subunitCFE50_01975Not AvailablePositive432784 - 43397142729.0
adenylosuccinate synthaseCFE50_01980Not AvailablePositive434050 - 43534546880.2

Displaying genes 401 – 410 of 4452 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.