Pseudomonas sp. PGPPP4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. PGPPP4 is characterized by having a single replicon, which is significant for its genomic organization. The accession number for this strain is NKID00000000.1, providing a reference for researchers seeking to retrieve genomic data related to this specific organism. Pseudomonas species are known for their metabolic versatility and environmental adaptability. While specific phenotypic traits and ecological roles for PGPPP4 are not provided, the genus Pseudomonas is generally recognized for its ability to thrive in diverse environments, including soil, water, and within various host organisms. This adaptability often makes Pseudomonas a crucial player in biogeochemical cycles and a useful organism in bioremediation efforts. The presence of a single replicon in Pseudomonas sp. PGPPP4 could suggest a streamlined genetic architecture, potentially contributing to its efficiency in replication and adaptability. This trait may also facilitate the organism's ability to respond to environmental changes rapidly, a hallmark of many Pseudomonas species. In conclusion, while specific traits of Pseudomonas sp. PGPPP4 are limited, the understanding of its single replicon structure positions it within a genus renowned for ecological versatility and adaptability. Such traits may offer insights into its potential roles in nutrient cycling and bioremediation processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. PGPPP4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. PGPPP4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pseudomonas sp. PGPPP4 NODE_8869, whole genome shotgun

Gene Summary

Adenine Count

828141 bp

Thymine Count

830144 bp

Guanine Count

1620587 bp

Cytosine Count

1605551 bp

Genome Length

4884423 bp

Protein-coding Genes

4381 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCFE50_00100Not AvailablePositive15006 - 1555720103.4
acetyl-coa acetyltransferaseCFE50_00105Not AvailablePositive15581 - 1681042943.6
sensor histidine kinaseCFE50_00110Not AvailableNegative16928 - 1832250795.3
dna-binding response regulatorCFE50_00115Not AvailableNegative18319 - 1899624578.6
chorismate mutaseCFE50_00120Not AvailableNegative19055 - 1960619430.5
hypothetical proteinCFE50_00125Not AvailableNegative20234 - 2052410319.3
hypothetical proteinCFE50_00130Not AvailableNegative20521 - 2079610107.8
udp-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferaseCFE50_00135Not AvailablePositive21060 - 2224442683.3
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseCFE50_00140Not AvailablePositive22241 - 2323036648.5
bifunctional udp-glucuronic acid oxidase/udp-4-amino-4-deoxy-l-arabinose formyltransferaseCFE50_00145Not AvailablePositive23242 - 2522473643.9

Displaying genes 31 – 40 of 4452 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.