Pseudomonas nitroreducens strain DF05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas nitroreducens strain DF05 is characterized by a single replicon, which contributes to its genomic stability and adaptability in various environments. The strain is cataloged under the accession number NJBA00000000.1, indicating it is part of a broader genomic dataset accessible for scientific scrutiny. The simplicity of having one replicon can suggest a streamlined genetic structure, potentially affording Pseudomonas nitroreducens strain DF05 a competitive advantage in nutrient-limited or stressed environments. The traits of Pseudomonas species generally include metabolic versatility, allowing them to thrive in diverse ecological niches. This versatility may be particularly beneficial in bioremediation, where such microorganisms can degrade pollutants or adapt to various substrates. In summary, Pseudomonas nitroreducens strain DF05 exemplifies the adaptability inherent in the Pseudomonas genus, facilitated by its single replicon structure. This trait underscores the potential role of strain DF05 in ecological processes, particularly in environments affected by anthropogenic pollutants, where its metabolic capabilities can be harnessed for environmental management and remediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas nitroreducens
Strainstrain DF05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas nitroreducens strain DF05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas nitroreducens strain DF05 plasmid unnamed1

Gene Summary

Adenine Count

1122833 bp

Thymine Count

1144271 bp

Guanine Count

2135585 bp

Cytosine Count

2083863 bp

Genome Length

6487527 bp

Protein-coding Genes

5800 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorCEG18_27125Not AvailablePositive5935617 - 593651333191.3
hypothetical proteinCEG18_27130Not AvailablePositive5936662 - 593703013274.6
yebc/pmpr family dna-binding transcriptional regulatorCEG18_27135Not AvailableNegative5937074 - 593777524938.5
gntr family transcriptional regulatorCEG18_27140Not AvailableNegative5937908 - 593930851219.7
class ii aldolaseCEG18_27145Not AvailablePositive5939481 - 594025428697.0
spermidine/putrescine abc transporter substrate-binding proteinCEG18_27150Not AvailablePositive5940337 - 594136537449.7
sam-dependent methyltransferaseCEG18_27155Not AvailableNegative5941482 - 594210823472.5
acyl-coa dehydrogenaseCEG18_27160Not AvailableNegative5942244 - 594401963375.6
acyl-coa synthetaseCEG18_27165Not AvailableNegative5944077 - 594569959901.1
pas domain-containing sensor histidine kinaseCEG18_27170Not AvailablePositive5945904 - 594815082094.1

Displaying genes 5401 – 5410 of 5951 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.