Nitrospira sp. UW-LDO-01 Bin_Nitrospira_4_final_99

Kingdom

Pseudomonadati

Phylum

Nitrospirota

Class

Nitrospiria

Order

Nitrospirales

Family

Nitrospiraceae

Genus

Nitrospira

Description

Nitrospira sp. UW-LDO-01, classified under the Bin_Nitrospira_4_final_99, is characterized by having a single replicon. This trait suggests a streamlined genomic organization that may contribute to its adaptability in various environments. The organism is cataloged under the accession number NIUT00000000.1, providing a reference point for further genomic studies and comparisons with other species within the Nitrospira genus. Nitrospira species are known for their role in the nitrogen cycle, particularly in the oxidation of nitrite to nitrate, a crucial process in both natural ecosystems and engineered systems such as wastewater treatment. The presence of this organism indicates its potential importance in biogeochemical cycling, especially in environments where nitrite accumulation occurs. Understanding the genomic characteristics of Nitrospira sp. UW-LDO-01 could provide insights into its metabolic capabilities and ecological functions. Overall, the single replicon and available genomic data for Nitrospira sp. UW-LDO-01 underscore its significance in nitrogen transformation processes. Further research may elucidate its specific roles in various ecological niches, contributing to our understanding of microbial interactions within nutrient cycles.

Taxonomy

KingdomPseudomonadati
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira sp. UW-LDO-01
StrainBin_Nitrospira_4_final_99

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Nitrospira sp. UW-LDO-01 Bin_Nitrospira_4_final_99, whole

Gene Summary

Adenine Count

880320 bp

Thymine Count

881411 bp

Guanine Count

1073521 bp

Cytosine Count

1073556 bp

Genome Length

3909997 bp

Protein-coding Genes

3747 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
preprotein translocase subunit tatbCCU26_16765Not AvailablePositive3396975 - 33972359644.39
rrna (cytidine-2'-o-)-methyltransferaseCCU26_16770Not AvailableNegative3397299 - 339800024686.2
c-type cytochrome biogenesis protein ccsbCCU26_16775Not AvailablePositive3398102 - 339890529182.5
glutamyl-trna reductaseCCU26_16780Not AvailablePositive3398926 - 340031751350.9
hydroxymethylbilane synthaseCCU26_16785Not AvailablePositive3400352 - 340129333732.0
uroporphyrinogen-iii c-methyltransferaseCCU26_16790Not AvailablePositive3401290 - 340210229019.3
vplpa-cterm-specific exosortase xrtdCCU26_16795Not AvailablePositive3402357 - 340399760193.8
hypothetical proteinCCU26_16800Not AvailablePositive3404010 - 340563558429.2
hypothetical proteinCCU26_16805Not AvailablePositive3405620 - 340804689093.0
sugar transporterCCU26_16810Not AvailablePositive3408136 - 340867219735.1

Displaying genes 3291 – 3300 of 3795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.