Nitrospira sp. UW-LDO-01 Bin_Nitrospira_4_final_99

Kingdom

Pseudomonadati

Phylum

Nitrospirota

Class

Nitrospiria

Order

Nitrospirales

Family

Nitrospiraceae

Genus

Nitrospira

Description

Nitrospira sp. UW-LDO-01, classified under the Bin_Nitrospira_4_final_99, is characterized by having a single replicon. This trait suggests a streamlined genomic organization that may contribute to its adaptability in various environments. The organism is cataloged under the accession number NIUT00000000.1, providing a reference point for further genomic studies and comparisons with other species within the Nitrospira genus. Nitrospira species are known for their role in the nitrogen cycle, particularly in the oxidation of nitrite to nitrate, a crucial process in both natural ecosystems and engineered systems such as wastewater treatment. The presence of this organism indicates its potential importance in biogeochemical cycling, especially in environments where nitrite accumulation occurs. Understanding the genomic characteristics of Nitrospira sp. UW-LDO-01 could provide insights into its metabolic capabilities and ecological functions. Overall, the single replicon and available genomic data for Nitrospira sp. UW-LDO-01 underscore its significance in nitrogen transformation processes. Further research may elucidate its specific roles in various ecological niches, contributing to our understanding of microbial interactions within nutrient cycles.

Taxonomy

KingdomPseudomonadati
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira sp. UW-LDO-01
StrainBin_Nitrospira_4_final_99

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Nitrospira sp. UW-LDO-01 Bin_Nitrospira_4_final_99, whole

Gene Summary

Adenine Count

880320 bp

Thymine Count

881411 bp

Guanine Count

1073521 bp

Cytosine Count

1073556 bp

Genome Length

3909997 bp

Protein-coding Genes

3747 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux transporter periplasmic adaptor subunitCCU26_07390Not AvailablePositive1543194 - 154444145791.7
hypothetical proteinCCU26_07395Not AvailableNegative1545319 - 15455197318.96
fructose 1,6-bisphosphataseCCU26_07400Not AvailablePositive1546004 - 154710740197.4
hypothetical proteinCCU26_07405Not AvailablePositive1547371 - 154802124032.4
methionyl-trna formyltransferaseCCU26_07410Not AvailablePositive1548319 - 154927233989.5
16s rrna (cytosine(967)-c(5))-methyltransferaseCCU26_07415Not AvailablePositive1549305 - 155071751804.9
ribulose-phosphate 3-epimeraseCCU26_07420Not AvailablePositive1550717 - 155141824644.0
phenylalanine--trna ligase subunit alphaCCU26_07425Not AvailablePositive1551429 - 155299457599.6
phenylalanine--trna ligase subunit betaCCU26_07430Not AvailablePositive1553003 - 155472163424.1
50s ribosomal protein l20CCU26_07435Not AvailableNegative1554847 - 155521213598.7

Displaying genes 1451 – 1460 of 3795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.