Pseudomonas sediminis strain PI11

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sediminis strain PI11 is characterized by having a single replicon. This trait is significant as it provides insights into the genomic organization of this strain, suggesting a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The strain is cataloged under the accession number NIQU00000000.1, which allows for its identification and retrieval in genomic databases. The streamlined genomic architecture of Pseudomonas sediminis strain PI11 may contribute to its ecological versatility, particularly in sediment environments where nutrient availability can fluctuate. This adaptability is a hallmark of the Pseudomonas genus, known for its metabolic diversity and ability to thrive in various ecological niches. As a member of the Pseudomonas genus, P. sediminis strain PI11 may play a role in biogeochemical cycling in sediments, potentially influencing nutrient dynamics and organic matter decomposition. Understanding the genetic and ecological implications of this strain can enhance our knowledge of microbial communities in sedimentary environments, which are crucial for maintaining ecosystem health and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sediminis
Strainstrain PI11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sediminis strain PI11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sediminis strain PI11 scaffold_26, whole genome

Gene Summary

Adenine Count

941871 bp

Thymine Count

891437 bp

Guanine Count

1490322 bp

Cytosine Count

1561132 bp

Genome Length

4884839 bp

Protein-coding Genes

4443 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rod shape-determining protein mredCDO35_02945Not AvailableNegative601916 - 60240418129.4
rod shape-determining protein mrecCDO35_02950Not AvailableNegative602404 - 60341436799.3
rod shape-determining proteinCDO35_02955Not AvailableNegative603546 - 60458337021.8
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit cCDO35_02960Not AvailablePositive604823 - 60511010376.4
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit aCDO35_02965Not AvailablePositive605127 - 60657851442.4
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit bCDO35_02970Not AvailablePositive606590 - 60803853021.3
septal ring lytic transglycosylase rlpa family lipoproteinCDO35_02975Not AvailablePositive608111 - 60853315110.2
sodium:calcium antiporterCDO35_02980Not AvailablePositive608625 - 60971938056.2
4-carboxymuconolactone decarboxylaseCDO35_02985Not AvailablePositive609722 - 61010814099.6
malate transporterCDO35_02990Not AvailableNegative610166 - 61110733372.7

Displaying genes 591 – 600 of 4506 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.