Pseudomonas sediminis strain PI11

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sediminis strain PI11 is characterized by having a single replicon. This trait is significant as it provides insights into the genomic organization of this strain, suggesting a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The strain is cataloged under the accession number NIQU00000000.1, which allows for its identification and retrieval in genomic databases. The streamlined genomic architecture of Pseudomonas sediminis strain PI11 may contribute to its ecological versatility, particularly in sediment environments where nutrient availability can fluctuate. This adaptability is a hallmark of the Pseudomonas genus, known for its metabolic diversity and ability to thrive in various ecological niches. As a member of the Pseudomonas genus, P. sediminis strain PI11 may play a role in biogeochemical cycling in sediments, potentially influencing nutrient dynamics and organic matter decomposition. Understanding the genetic and ecological implications of this strain can enhance our knowledge of microbial communities in sedimentary environments, which are crucial for maintaining ecosystem health and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sediminis
Strainstrain PI11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sediminis strain PI11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sediminis strain PI11 scaffold_26, whole genome

Gene Summary

Adenine Count

941871 bp

Thymine Count

891437 bp

Guanine Count

1490322 bp

Cytosine Count

1561132 bp

Genome Length

4884839 bp

Protein-coding Genes

4443 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorCDO35_14500Not AvailableNegative3151949 - 315283032287.1
3-isopropylmalate dehydratase large subunitCDO35_14505Not AvailablePositive3153055 - 315448250970.0
3-isopropylmalate dehydratase small subunitCDO35_14510Not AvailablePositive3154494 - 315514124306.6
3-isopropylmalate dehydrogenaseCDO35_14515Not AvailablePositive3155229 - 315631138521.7
aspartate-semialdehyde dehydrogenaseCDO35_14520Not AvailablePositive3156368 - 315748040304.9
aspartate-semialdehyde dehydrogenaseCDO35_14525Not AvailablePositive3157622 - 315863235609.0
peptigoglycan-binding protein lysmCDO35_14530Not AvailablePositive3158788 - 316161998888.8
trna pseudouridine(38-40) synthase truaCDO35_14535Not AvailablePositive3161627 - 316249032015.6
n-(5'-phosphoribosyl)anthranilate isomeraseCDO35_14540Not AvailablePositive3162515 - 316316822634.3
acetyl-coa carboxylase, carboxyltransferase subunit betaCDO35_14545Not AvailablePositive3163308 - 316419232205.5

Displaying genes 2891 – 2900 of 4506 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.