Pseudomonas sediminis strain PI11

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sediminis strain PI11 is characterized by having a single replicon. This trait is significant as it provides insights into the genomic organization of this strain, suggesting a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The strain is cataloged under the accession number NIQU00000000.1, which allows for its identification and retrieval in genomic databases. The streamlined genomic architecture of Pseudomonas sediminis strain PI11 may contribute to its ecological versatility, particularly in sediment environments where nutrient availability can fluctuate. This adaptability is a hallmark of the Pseudomonas genus, known for its metabolic diversity and ability to thrive in various ecological niches. As a member of the Pseudomonas genus, P. sediminis strain PI11 may play a role in biogeochemical cycling in sediments, potentially influencing nutrient dynamics and organic matter decomposition. Understanding the genetic and ecological implications of this strain can enhance our knowledge of microbial communities in sedimentary environments, which are crucial for maintaining ecosystem health and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sediminis
Strainstrain PI11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sediminis strain PI11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sediminis strain PI11 scaffold_26, whole genome

Gene Summary

Adenine Count

941871 bp

Thymine Count

891437 bp

Guanine Count

1490322 bp

Cytosine Count

1561132 bp

Genome Length

4884839 bp

Protein-coding Genes

4443 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-formyltetrahydrofolate cyclo-ligaseCDO35_10625Not AvailablePositive2339810 - 234040623139.4
eve domain-containing proteinCDO35_10630Not AvailablePositive2340787 - 234123616930.2
sensor domain-containing diguanylate cyclaseCDO35_10635Not AvailablePositive2341286 - 234314270370.8
flagellar basal body-associated protein flilCDO35_10640Not AvailableNegative2343357 - 234376114901.2
nadph:quinone oxidoreductaseCDO35_10645Not AvailablePositive2343917 - 234489734224.5
duf3309 domain-containing proteinCDO35_10650Not AvailableNegative2345098 - 23452565440.21
cdp-6-deoxy-delta-3,4-glucoseen reductaseCDO35_10655Not AvailableNegative2345563 - 234653135427.4
3-octaprenyl-4-hydroxybenzoate decarboxylaseCDO35_10660Not AvailableNegative2346531 - 234799754892.3
transcription termination factor rhoCDO35_10665Not AvailableNegative2348245 - 234950446954.1
thiol reductase thioredoxinCDO35_10670Not AvailableNegative2349737 - 235006311911.3

Displaying genes 2121 – 2130 of 4506 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.