Pseudomonas sediminis strain PI11

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sediminis strain PI11 is characterized by having a single replicon. This trait is significant as it provides insights into the genomic organization of this strain, suggesting a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The strain is cataloged under the accession number NIQU00000000.1, which allows for its identification and retrieval in genomic databases. The streamlined genomic architecture of Pseudomonas sediminis strain PI11 may contribute to its ecological versatility, particularly in sediment environments where nutrient availability can fluctuate. This adaptability is a hallmark of the Pseudomonas genus, known for its metabolic diversity and ability to thrive in various ecological niches. As a member of the Pseudomonas genus, P. sediminis strain PI11 may play a role in biogeochemical cycling in sediments, potentially influencing nutrient dynamics and organic matter decomposition. Understanding the genetic and ecological implications of this strain can enhance our knowledge of microbial communities in sedimentary environments, which are crucial for maintaining ecosystem health and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sediminis
Strainstrain PI11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sediminis strain PI11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sediminis strain PI11 scaffold_26, whole genome

Gene Summary

Adenine Count

941871 bp

Thymine Count

891437 bp

Guanine Count

1490322 bp

Cytosine Count

1561132 bp

Genome Length

4884839 bp

Protein-coding Genes

4443 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pili assembly chaperoneCDO35_07510Not AvailablePositive1669179 - 167048348873.6
dna mismatch repair protein mutsCDO35_07515Not AvailablePositive1670575 - 167314295112.3
ferredoxinCDO35_07520Not AvailablePositive1673281 - 167360412256.3
rna polymerase sigma factor rposCDO35_07525Not AvailableNegative1674040 - 167504738254.8
peptigoglycan-binding protein lysmCDO35_07530Not AvailableNegative1675149 - 167596428841.3
duf368 domain-containing proteinCDO35_07535Not AvailableNegative1676076 - 167701434018.7
protein-l-isoaspartate o-methyltransferaseCDO35_07540Not AvailableNegative1677040 - 167771424896.2
5'/3'-nucleotidase sureCDO35_07545Not AvailableNegative1677714 - 167846326599.9
trna pseudouridine(13) synthase trudCDO35_07550Not AvailableNegative1678451 - 167950938842.5
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseCDO35_07555Not AvailableNegative1679506 - 167997916678.3

Displaying genes 1501 – 1510 of 4506 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.