Pseudomonas sediminis strain PI11

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sediminis strain PI11 is characterized by having a single replicon. This trait is significant as it provides insights into the genomic organization of this strain, suggesting a streamlined genetic structure that may be advantageous for its adaptability and survival in various environments. The strain is cataloged under the accession number NIQU00000000.1, which allows for its identification and retrieval in genomic databases. The streamlined genomic architecture of Pseudomonas sediminis strain PI11 may contribute to its ecological versatility, particularly in sediment environments where nutrient availability can fluctuate. This adaptability is a hallmark of the Pseudomonas genus, known for its metabolic diversity and ability to thrive in various ecological niches. As a member of the Pseudomonas genus, P. sediminis strain PI11 may play a role in biogeochemical cycling in sediments, potentially influencing nutrient dynamics and organic matter decomposition. Understanding the genetic and ecological implications of this strain can enhance our knowledge of microbial communities in sedimentary environments, which are crucial for maintaining ecosystem health and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sediminis
Strainstrain PI11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sediminis strain PI11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sediminis strain PI11 scaffold_26, whole genome

Gene Summary

Adenine Count

941871 bp

Thymine Count

891437 bp

Guanine Count

1490322 bp

Cytosine Count

1561132 bp

Genome Length

4884839 bp

Protein-coding Genes

4443 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-dependent oxidoreductaseCDO35_05855Not AvailableNegative1288610 - 128993848370.7
rubredoxin-nad(+) reductaseCDO35_05860Not AvailableNegative1289949 - 129135549506.8
aldehyde dehydrogenaseCDO35_05865Not AvailableNegative1291361 - 129280651376.5
2fe-2s ferredoxinCDO35_05870Not AvailableNegative1292817 - 129397743469.7
lysr family transcriptional regulatorCDO35_05875Not AvailableNegative1294423 - 129534935208.9
trna dihydrouridine(20/20a) synthase dusaCDO35_05880Not AvailablePositive1295590 - 129659137089.7
fur family transcriptional regulatorCDO35_05885Not AvailableNegative1296585 - 129688711115.3
transaldolaseCDO35_05890Not AvailablePositive1297083 - 129800933446.9
anti-sigma factor antagonistCDO35_05895Not AvailableNegative1298132 - 129861417724.4
fused response regulator/phosphataseCDO35_05900Not AvailableNegative1298623 - 129980743311.5

Displaying genes 1171 – 1180 of 4506 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.