Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b

Gram-negative

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b is a Gram-negative bacterium belonging to the Campylobacter genus. This strain has been characterized by possessing a single replicon, indicating a streamlined genetic structure. Notably, it has been associated with the host Homo sapiens, suggesting its relevance in human health contexts, particularly in gastrointestinal infections. The strain's genomic sequence is cataloged under the accession number NIQS00000000.1, providing a reference for further research and studies related to its characteristics and pathogenic potential. Campylobacter species, including C. hyointestinalis, are known for their role in gastrointestinal disease, and understanding the specific traits of strain VP28b can contribute to insights regarding its epidemiology and virulence mechanisms. From a biological and ecological perspective, the presence of C. hyointestinalis subsp. hyointestinalis in humans indicates its potential as an opportunistic pathogen within the gut microbiome. This relationship highlights the importance of monitoring such strains in clinical settings, as they may contribute to dysbiosis or gastrointestinal disturbances. Moreover, the single replicon nature of strain VP28b may provide advantages in terms of adaptability and survival within the host environment, further emphasizing the need for ongoing research into its pathogenicity and interactions with human host defenses.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter hyointestinalis
Strainsubsp. hyointestinalis strain VP28b

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b


Gene Summary

Adenine Count

556684 bp

Thymine Count

560467 bp

Guanine Count

279980 bp

Cytosine Count

303154 bp

Genome Length

1700285 bp

Protein-coding Genes

1688 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive1236 - 1353Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive1488 - 4417Not Available
molecular chaperone htpgCDQ81_00005Not AvailableNegative271 - 211870343.3
Trna-metNot AvailableNot AvailablePositive2574 - 2648Not Available
Trna-glnNot AvailableNot AvailablePositive2665 - 2739Not Available
hypothetical proteinCDQ81_00020Not AvailableNegative3489 - 410923052.2
16s ribosomal rnaNot AvailableNot AvailablePositive5147 - 6665Not Available
glutamate-5-semialdehyde dehydrogenaseCDQ81_00025Not AvailableNegative4225 - 544844767.1
cbb3-type cytochrome oxidase assembly protein ccosCDQ81_00030Not AvailablePositive5528 - 647834747.6
hypothetical proteinCDQ81_00035Not AvailablePositive6488 - 840774688.2

Displaying genes 1 – 10 of 1736 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites

Health Effects

No health effects information available for this bacterium.