Halorubrum sp. Hd13

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. Hd13 is a rod-shaped microorganism characterized by the presence of flagella, which likely contributes to its motility in various environments. This species, belonging to the family Halorubraceae, is notable for having a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The reference accession number for Halorubrum sp. Hd13 is NHOY00000000.1, which provides a genetic basis for further studies and comparisons with other halophilic microorganisms. As a member of the Halorubrum genus, this organism thrives in high-salinity environments, which is a typical characteristic of many extremophiles. The presence of flagella suggests that Halorubrum sp. Hd13 may exhibit active movement in its saline habitat, potentially enabling it to navigate towards nutrient sources or optimal conditions for growth. The ecological role of such halophilic microorganisms is significant, as they contribute to biogeochemical cycles in saline environments and can impact the microbial diversity and stability of these ecosystems. In summary, Halorubrum sp. Hd13's rod shape and flagella presence, along with its single replicon and genetic data, underscore its adaptations to extreme saline environments and highlight its role in microbial ecology and evolution in such habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. Hd13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. Hd13 contig0124, whole genome shotgun sequence.

Gene Summary

Adenine Count

619928 bp

Thymine Count

614038 bp

Guanine Count

1289934 bp

Cytosine Count

1287109 bp

Genome Length

3811317 bp

Protein-coding Genes

3538 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazoleglycerol-phosphate dehydrataseDJ81_13060Not AvailableNegative2727178 - 272777421495.7
amino acid transporterDJ81_13065Not AvailablePositive2727883 - 272935849445.2
universal stress proteinDJ81_13070Not AvailablePositive2729360 - 273020530048.9
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseDJ81_13075Not AvailableNegative2730247 - 273098725093.2
hypothetical proteinDJ81_13080Not AvailableNegative2731123 - 273194428035.4
thiamine abc transporter substrate-binding proteinDJ81_13085Not AvailablePositive2732092 - 273342947147.4
sulfate abc transporter permeaseDJ81_13090Not AvailablePositive2733386 - 273527865752.0
spermidine/putrescine abc transporter atp-binding proteinDJ81_13095Not AvailablePositive2735259 - 273647943133.0
excinuclease abc subunit cDJ81_13100Not AvailableNegative2736889 - 273777332116.3
hypothetical proteinDJ81_13105Not AvailablePositive2738016 - 273908636755.6

Displaying genes 2531 – 2540 of 3587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.