Yersinia frederiksenii strain CFSAN060535

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia frederiksenii strain CFSAN060535 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which suggests motility. This strain has been isolated from environmental sources and food, indicating its potential presence in diverse ecological niches. Yersinia frederiksenii is known to have a single replicon, which is a feature that contributes to its genomic stability and replication efficiency. This strain has been documented to infect hosts such as Homo sapiens and various Metazoa, highlighting its relevance in both human health and broader ecological interactions. The accession number for this strain is NHOJ00000000.1, which aids in the identification and classification of Yersinia frederiksenii within microbial databases. The presence of this bacterium in food and environmental settings raises important considerations regarding food safety and public health, as it could potentially be associated with foodborne illnesses. Ecologically, the adaptability of Yersinia frederiksenii to inhabit both environmental and food sources may reflect its role in nutrient cycling and interactions within microbial communities. Understanding the distribution and characteristics of this strain can provide insights into its behavior in various ecosystems and its implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia frederiksenii
Strainstrain CFSAN060535

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Yersinia frederiksenii strain CFSAN060535
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment; food
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia frederiksenii strain CFSAN060535 CFSAN060535_contig_66,

Gene Summary

Adenine Count

1282314 bp

Thymine Count

1284764 bp

Guanine Count

1127070 bp

Cytosine Count

1121794 bp

Genome Length

4815983 bp

Protein-coding Genes

4191 genes

Non-Coding Genes

260 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endopeptidase ivCBW53_10070Not AvailablePositive2126773 - 212765432889.6
outer membrane autotransporter barrel domain-containing proteinCBW53_10075Not AvailableNegative2127780 - 2131601134147.0
hypothetical proteinCBW53_10080Not AvailablePositive2132032 - 2137056183737.0
penicillin-binding protein 1cCBW53_10085Not AvailablePositive2137114 - 213945386705.3
exotoxinCBW53_10090Not AvailablePositive2139631 - 214213593607.4
nucleoside-diphosphate kinaseCBW53_10095Not AvailablePositive2142424 - 214285215545.4
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnCBW53_10100Not AvailablePositive2143080 - 214427644220.4
type iv pilus biogenesis/stability protein pilwCBW53_10105Not AvailablePositive2144434 - 214518327547.5
helix-turn-helix domain-containing proteinCBW53_10110Not AvailablePositive2145173 - 214618635500.9
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseCBW53_10115Not AvailablePositive2146291 - 214741540737.1

Displaying genes 2091 – 2100 of 4451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.