Sphingobium sp. GW456-12-10-14-TSB1 unitig_4.quiver.pilon

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. GW456-12-10-14-TSB1, identified by the accession number NGUN00000000.1, is characterized by the presence of flagella, which suggests it possesses motility capabilities. This trait can be crucial for the organism's ecological interactions, as flagella allow for movement toward favorable environments or away from harmful conditions. Additionally, Sphingobium sp. GW456-12-10-14-TSB1 has a single replicon, indicating that its genetic material is organized in a singular circular chromosome. This genetic structure is typical for many bacteria and may influence replication and gene expression efficiency within the organism. The presence of flagella in Sphingobium sp. GW456-12-10-14-TSB1 suggests potential ecological benefits, such as the ability to colonize diverse environments or respond to chemical gradients. This motility could enable the bacterium to explore nutrient sources or evade unfavorable conditions in its habitat. Understanding the specific ecological roles and interactions of motile bacteria like Sphingobium sp. can provide insights into microbial dynamics in various ecosystems, including their roles in biogeochemical cycles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. GW456-12-10-14-TSB1
Strainunitig_4.quiver.pilon

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. GW456-12-10-14-TSB1 unitig_4.quiver.pilon, whole

Gene Summary

Adenine Count

936561 bp

Thymine Count

936889 bp

Guanine Count

1601445 bp

Cytosine Count

1603684 bp

Genome Length

5078579 bp

Protein-coding Genes

4608 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ti-type conjugative transfer relaxase traaCA262_04455Not AvailablePositive888983 - 891976111260.0
hypothetical proteinCA262_04460Not AvailablePositive891995 - 89275628062.5
deoxyribonucleaseCA262_04465Not AvailableNegative892785 - 895931115956.0
hypothetical proteinCA262_04470Not AvailableNegative895928 - 89661425089.6
hypothetical proteinCA262_04475Not AvailableNegative896623 - 89790646446.4
n-6 dna methylaseCA262_04480Not AvailableNegative897896 - 89947959280.2
Trna-metNot AvailableNot AvailablePositive899764 - 899840Not Available
alpha/beta hydrolaseCA262_04490Not AvailableNegative899938 - 90078029085.8
circularly permuted type 2 atp-grasp proteinCA262_04495Not AvailablePositive900914 - 90232351677.1
alpha-e domain-containing proteinCA262_04500Not AvailablePositive902469 - 90340135687.6

Displaying genes 881 – 890 of 4700 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.