Sphingobium sp. GW456-12-10-14-TSB1 unitig_4.quiver.pilon

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium sp. GW456-12-10-14-TSB1, identified by the accession number NGUN00000000.1, is characterized by the presence of flagella, which suggests it possesses motility capabilities. This trait can be crucial for the organism's ecological interactions, as flagella allow for movement toward favorable environments or away from harmful conditions. Additionally, Sphingobium sp. GW456-12-10-14-TSB1 has a single replicon, indicating that its genetic material is organized in a singular circular chromosome. This genetic structure is typical for many bacteria and may influence replication and gene expression efficiency within the organism. The presence of flagella in Sphingobium sp. GW456-12-10-14-TSB1 suggests potential ecological benefits, such as the ability to colonize diverse environments or respond to chemical gradients. This motility could enable the bacterium to explore nutrient sources or evade unfavorable conditions in its habitat. Understanding the specific ecological roles and interactions of motile bacteria like Sphingobium sp. can provide insights into microbial dynamics in various ecosystems, including their roles in biogeochemical cycles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium sp. GW456-12-10-14-TSB1
Strainunitig_4.quiver.pilon

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium sp. GW456-12-10-14-TSB1 unitig_4.quiver.pilon, whole

Gene Summary

Adenine Count

936561 bp

Thymine Count

936889 bp

Guanine Count

1601445 bp

Cytosine Count

1603684 bp

Genome Length

5078579 bp

Protein-coding Genes

4608 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-leuNot AvailableNot AvailablePositive1064574 - 1064659Not Available
integration host factor subunit betaCA262_05070Not AvailableNegative1064708 - 106499810858.1
30s ribosomal protein s1CA262_05075Not AvailableNegative1065166 - 106687861776.5
cytidylate kinaseCA262_05080Not AvailableNegative1067048 - 106768322017.2
hypothetical proteinCA262_05085Not AvailableNegative1067680 - 10679319021.32
3-phosphoshikimate 1-carboxyvinyltransferaseCA262_05090Not AvailableNegative1067928 - 106926845925.7
tigr02300 family proteinCA262_05095Not AvailablePositive1069421 - 106975612005.3
Trna-alaNot AvailableNot AvailablePositive1069846 - 1069921Not Available
Trna-alaNot AvailableNot AvailablePositive1070037 - 1070112Not Available
gaf domain-containing proteinCA262_05110Not AvailablePositive1070197 - 107066116924.2

Displaying genes 1001 – 1010 of 4700 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.