Phocaeicola dorei strain An16

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain An16 is a Gram-negative, anaerobic, non-motile rod-shaped bacterium classified as a chemoheterotroph. This organism thrives in multiple habitats and has an optimal growth temperature of 37°C, placing it within the mesophilic temperature range. Notably, Phocaeicola dorei strain An16 does not form spores and possesses a single replicon. The absence of mobility suggests that this strain relies on passive means for dispersion within its environment, potentially influenced by the physical and chemical properties of its habitat. The presence of flagella indicates that while the organism itself may not be motile, it may have the capability for movement in a broader context, possibly affecting its interactions with other microorganisms or its environment. Understanding the ecological role of Phocaeicola dorei strain An16 could provide insights into its function within various ecosystems. As a chemoheterotroph, it likely plays a role in nutrient cycling, breaking down organic materials and contributing to the overall microbial diversity and biochemical processes within its habitats. Its anaerobic nature suggests involvement in environments lacking oxygen, such as the intestines of animals or other anoxic niches, where it may interact with other anaerobic bacteria. These traits underline the significance of Phocaeicola dorei strain An16 in microbiological studies and its potential implications in health and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strainstrain An16

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain An16
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain An16 An16_contig_43, whole genome shotgun

Gene Summary

Adenine Count

1588569 bp

Thymine Count

1538368 bp

Guanine Count

1082565 bp

Cytosine Count

1161857 bp

Genome Length

5371359 bp

Protein-coding Genes

4239 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
slc13 family permeaseB5F00_04645Not AvailableNegative1117544 - 111940667150.1
haloacid dehalogenaseB5F00_04650Not AvailablePositive1119595 - 112000214540.6
isochorismate synthaseB5F00_04655Not AvailablePositive1119999 - 112116844328.7
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseB5F00_04660Not AvailablePositive1121168 - 112284162975.0
1,4-dihydroxy-2-naphthoyl-coa synthaseB5F00_04665Not AvailablePositive1122841 - 112366230338.5
hypothetical proteinB5F00_04670Not AvailablePositive1123683 - 112406614976.9
o-succinylbenzoate synthaseB5F00_04675Not AvailablePositive1124045 - 112510039882.0
o-succinylbenzoic acid--coa ligaseB5F00_04680Not AvailablePositive1125097 - 112618240574.4
arac family transcriptional regulatorB5F00_04685Not AvailablePositive1126438 - 112732534472.4
duf4250 domain-containing proteinB5F00_04690Not AvailableNegative1127388 - 11275646921.42

Displaying genes 951 – 960 of 4337 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.