Phocaeicola dorei strain An16

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei strain An16 is a Gram-negative, anaerobic, non-motile rod-shaped bacterium classified as a chemoheterotroph. This organism thrives in multiple habitats and has an optimal growth temperature of 37°C, placing it within the mesophilic temperature range. Notably, Phocaeicola dorei strain An16 does not form spores and possesses a single replicon. The absence of mobility suggests that this strain relies on passive means for dispersion within its environment, potentially influenced by the physical and chemical properties of its habitat. The presence of flagella indicates that while the organism itself may not be motile, it may have the capability for movement in a broader context, possibly affecting its interactions with other microorganisms or its environment. Understanding the ecological role of Phocaeicola dorei strain An16 could provide insights into its function within various ecosystems. As a chemoheterotroph, it likely plays a role in nutrient cycling, breaking down organic materials and contributing to the overall microbial diversity and biochemical processes within its habitats. Its anaerobic nature suggests involvement in environments lacking oxygen, such as the intestines of animals or other anoxic niches, where it may interact with other anaerobic bacteria. These traits underline the significance of Phocaeicola dorei strain An16 in microbiological studies and its potential implications in health and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strainstrain An16

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei strain An16
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain An16 An16_contig_43, whole genome shotgun

Gene Summary

Adenine Count

1588569 bp

Thymine Count

1538368 bp

Guanine Count

1082565 bp

Cytosine Count

1161857 bp

Genome Length

5371359 bp

Protein-coding Genes

4239 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-l-arabinofuranosidaseB5F00_02170Not AvailableNegative515968 - 51794775410.3
arabinan endo-1,5-alpha-l-arabinosidaseB5F00_02175Not AvailableNegative517971 - 51950657658.0
hybrid sensor histidine kinase/response regulatorB5F00_02180Not AvailablePositive519776 - 524002161518.0
alpha-glucosidaseB5F00_02185Not AvailablePositive524135 - 52606373068.7
susc/raga family tonb-linked outer membrane proteinB5F00_02190Not AvailablePositive526495 - 529704119134.0
ragb/susd family nutrient uptake outer membrane proteinB5F00_02195Not AvailablePositive529724 - 53147566214.8
hypothetical proteinB5F00_02200Not AvailablePositive531500 - 53329064754.3
arabinan endo-1,5-alpha-l-arabinosidaseB5F00_02205Not AvailablePositive533361 - 53525070111.3
cysteine--trna ligaseB5F00_02210Not AvailablePositive535548 - 53702956303.9
histidine ammonia-lyaseB5F00_02215Not AvailablePositive537198 - 53876958974.4

Displaying genes 461 – 470 of 4337 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.