Serratia nematodiphila strain CRK0003

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Serratia

Description

Serratia nematodiphila strain CRK0003 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which contributes to its motility. This strain is notable for having a single replicon, indicating a relatively streamlined genomic organization. The accession number for Serratia nematodiphila strain CRK0003 is NEYQ00000000.2, which serves as a reference point for genomic and sequence data related to this organism. The significance of this bacterium lies in its classification within the genus Serratia, which is known for its diverse ecological roles and interactions with various hosts, including nematodes. The presence of flagella in Serratia nematodiphila strain CRK0003 suggests an adaptation to its environment, allowing for movement toward nutrient sources or away from unfavorable conditions. This trait may enhance its survival and ecological success in specific niches. Understanding the characteristics of Serratia nematodiphila strain CRK0003 contributes to the broader knowledge of microbial diversity and ecology. Its ability to thrive in certain environments may have implications for its interactions with nematodes, potentially influencing soil health and nutrient cycling. Further research into this strain could uncover its role in microbial communities and its potential applications in biotechnology or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia nematodiphila
Strainstrain CRK0003

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Serratia nematodiphila strain CRK0003
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Serratia nematodiphila strain CRK0003 CRK0003_NODE_24.ctg_1, whole

Gene Summary

Adenine Count

1043909 bp

Thymine Count

1051246 bp

Guanine Count

1562772 bp

Cytosine Count

1546049 bp

Genome Length

5203976 bp

Protein-coding Genes

4799 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxyphenylacetate 3-monooxygenase, oxygenase componentCAG37_005930Not AvailableNegative1228725 - 123028759168.2
4-hydroxyphenylacetate catabolism regulatory protein hpaaCAG37_005935Not AvailableNegative1230466 - 123136234116.8
4-hydroxyphenylacetate permeaseCAG37_005940Not AvailableNegative1231397 - 123276750227.3
4-hydroxy-2-oxoheptanedioate aldolaseCAG37_005945Not AvailableNegative1232771 - 123356528378.1
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseCAG37_005950Not AvailableNegative1233643 - 123444629617.4
5-carboxymethyl-2-hydroxymuconate delta-isomeraseCAG37_005955Not AvailableNegative1234461 - 123484714588.6
3,4-dihydroxyphenylacetate 2,3-dioxygenaseCAG37_005960Not AvailableNegative1234898 - 123597140374.6
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseCAG37_005965Not AvailableNegative1236009 - 123746352712.3
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseCAG37_005970Not AvailableNegative1237460 - 123822428693.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseCAG37_005975Not AvailableNegative1238221 - 123885322471.8

Displaying genes 1181 – 1190 of 4898 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.