Limnohabitans sp. Hippo3 LimC-Hippo3-C31

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Limnohabitans

Description

Limnohabitans sp. Hippo3 LimC-Hippo3-C31 is characterized by having a single replicon, which is indicative of its genomic organization. The genome of this strain is accessible under the accession number NESF00000000.1, providing a resource for further genetic and functional studies. The single replicon structure can suggest a streamlined genomic architecture, which may be advantageous for adaptation to specific ecological niches. This trait is often observed in aquatic microorganisms, allowing for efficient replication and regulation of essential genes in fluctuating environments. Understanding the genomic features of Limnohabitans sp. Hippo3 LimC-Hippo3-C31 contributes to our knowledge of microbial diversity in freshwater ecosystems. Given that Limnohabitans species are often associated with water bodies, their ecological roles could include biogeochemical cycling and interactions within microbial communities. The streamlined genomic structure might also facilitate rapid responses to environmental changes, highlighting the adaptability of this strain in freshwater habitats. Overall, the genomic insights into Limnohabitans sp. Hippo3 LimC-Hippo3-C31 underscore its potential significance in the context of freshwater microbiology, where single replicon organisms may serve as key players in maintaining ecosystem stability and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusLimnohabitans
SpeciesLimnohabitans sp. Hippo3
StrainLimC-Hippo3-C31

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnohabitans sp. Hippo3 LimC-Hippo3-C31, whole genome shotgun

Gene Summary

Adenine Count

585815 bp

Thymine Count

578112 bp

Guanine Count

913355 bp

Cytosine Count

913399 bp

Genome Length

2990681 bp

Protein-coding Genes

2805 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine--trna ligaseB9Z34_12950Not AvailablePositive2701200 - 270243245032.4
cation diffusion facilitator family transporterB9Z34_12955Not AvailablePositive2702482 - 270340833625.8
d-tyrosyl-trna(tyr) deacylaseB9Z34_12960Not AvailablePositive2703405 - 270384815586.0
atp-dependent rna helicase dbpaB9Z34_12965Not AvailablePositive2703882 - 270529150560.2
rrna maturation rnase ybeyB9Z34_12970Not AvailableNegative2705513 - 270596816862.0
phosphate starvation-inducible protein phohB9Z34_12975Not AvailableNegative2705988 - 270696835703.2
holliday junction branch migration protein ruvaB9Z34_12980Not AvailablePositive2707054 - 270762920115.6
holliday junction branch migration dna helicase ruvbB9Z34_12985Not AvailablePositive2707644 - 270869638943.2
histidine phosphatase family proteinB9Z34_12990Not AvailableNegative2708837 - 270948123755.1
hypothetical proteinB9Z34_12995Not AvailableNegative2709496 - 271012522374.0

Displaying genes 2571 – 2580 of 2856 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.