Escherichia coli strain OLC1000

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain OLC1000 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle. This strain is capable of mobility due to the presence of flagella and typically forms arrangements of single cells or pairs. It thrives optimally at 37°C and falls within the mesophilic temperature range. OLC1000 is predominantly host-associated and has a diverse range of hosts, including Homo sapiens, various mammals such as Bos taurus and Canis lupus familiaris, birds like Gallus gallus and Meleagris gallopavo, as well as several plant species such as Solanum lycopersicum. This reflects its ecological versatility and ability to inhabit multiple biological niches. The strain is implicated in various health conditions, particularly in humans, where it can cause urinary tract infections (UTIs), gastrointestinal infections, and even severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). Its pathogenicity is significant, with a broad spectrum of associated diseases including food poisoning, colibacillosis, and septicemia. The presence of E. coli strain OLC1000 in multiple hosts suggests a complex ecological relationship, where it can act as a free-living organism while also being a pathogen in certain contexts. This dual role underscores the importance of understanding host-pathogen interactions and the potential health impacts of such versatile strains in both human health and broader ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain OLC1000

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain OLC1000
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain OLC1000


Gene Summary

Adenine Count

1309692 bp

Thymine Count

1317008 bp

Guanine Count

1348180 bp

Cytosine Count

1316072 bp

Genome Length

5290952 bp

Protein-coding Genes

4873 genes

Non-Coding Genes

368 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail tape measure proteinAW059_04175Not AvailablePositive848820 - 851627100039.0
Tail proteinAW059_04180Not AvailablePositive851634 - 85212818535.2
Serine acetyltransferaseAW059_04185Not AvailablePositive852381 - 85285717577.7
Qin prophageAW059_04190Not AvailableNegative852901 - 85347921198.8
Tail fiber proteinAW059_04195Not AvailableNegative853488 - 85437832410.4
Side tail fiberAW059_04200Not AvailableNegative854375 - 85692490889.3
Tail protein iAW059_04205Not AvailableNegative856927 - 85745719789.6
Baseplate j/gp47 family proteinAW059_04210Not AvailableNegative857450 - 85834631888.7
Lysozyme family baseplate assembly proteinAW059_04215Not AvailableNegative858350 - 85870012893.7
Baseplate assembly protein vAW059_04220Not AvailableNegative858697 - 85926319577.2

Displaying genes 11 – 20 of 5241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total