Ralstonia pickettii DTP0602

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Ralstonia

Description

Ralstonia pickettii DTP0602 is a Gram-negative, rod-shaped bacterium known for its heterotrophic metabolism, utilizing organic compounds as energy sources. This organism is aerobic, requiring oxygen for growth, and possesses flagella, which contribute to its motility. R. pickettii DTP0602 is classified as mesophilic, thriving within moderate temperature ranges conducive to its biological processes. This bacterium has a unique genomic structure characterized by three replicons and is surrounded by two membranes, typical of Gram-negative bacteria. Its ecological role is described as free-living, indicating that it does not rely on a host for survival and can inhabit a variety of environments. Notably, R. pickettii is found in multiple habitats, suggesting a versatile adaptability to diverse ecological niches. This adaptability may be linked to its capacity for heterotrophy, allowing it to exploit various organic materials present in different environments. The presence of multiple accessions (NC_022513.1; NC_022514.1; NC_022515.1) in genomic databases indicates that R. pickettii DTP0602 is of interest for further research, potentially contributing to our understanding of microbial diversity and ecological interactions. The ecological insight from this organism's characteristics highlights the importance of heterotrophic bacteria in nutrient cycling and their role in maintaining ecosystem balance across varied habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusRalstonia
SpeciesRalstonia pickettii
StrainDTP0602

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Ralstonia pickettii DTP0602
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph - Heterotroph
PathogenicityNot Available

Genome Summary

Ralstonia pickettii DTP0602 chromosome 1, complete sequence.

Gene Summary

Adenine Count

760060 bp

Thymine Count

764248 bp

Guanine Count

1487980 bp

Cytosine Count

1486857 bp

Genome Length

4499145 bp

Protein-coding Genes

3996 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4390 domain-containing proteinN234_RS20065Not AvailableNegative4431273 - 443210930497.4
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbN234_RS20070Not AvailableNegative4432185 - 443360351034.0
zinc metalloprotease htpxN234_RS20075Not AvailableNegative4433758 - 443461830779.7
methionyl-trna formyltransferaseN234_RS20080Not AvailableNegative4434835 - 443585735148.4
peptide deformylaseN234_RS20085Not AvailableNegative4436033 - 443653919402.4
lysm peptidoglycan-binding domain-containing proteinN234_RS20090Not AvailablePositive4436700 - 443786941621.4
dna-processing protein dpraN234_RS20095Not AvailablePositive4437877 - 443854523014.7
thioredoxin family proteinN234_RS20100Not AvailablePositive4438639 - 443904314442.3
dna topoisomerase iiiN234_RS20105Not AvailablePositive4439202 - 444190499078.3
lysr family transcriptional regulatorN234_RS20110Not AvailableNegative4442002 - 444294934923.2

Displaying genes 4011 – 4020 of 7317 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

349 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 349 metabolites

Health Effects

No health effects information available for this bacterium.