Hyphomicrobium denitrificans 1NES1

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans 1NES1 is a Gram-negative bacterium characterized as aerobic and exhibiting a bacilli shape. This organism is non-motile, possessing flagella, which may indicate a capacity for other forms of movement or attachment in its environment, despite lacking the ability to swim independently. It thrives within a mesophilic temperature range, suitable for growth at moderate temperatures. H. denitrificans 1NES1 is classified as free-living, which suggests it can exist independently without reliance on a host. This feature allows it to inhabit various ecological niches, where it may contribute to nutrient cycling and ecosystem dynamics. The bacterium has a single replicon, indicating a relatively simple genomic organization that could reflect its ecological adaptability. The accession number NC_021172.1 provides a reference for the genomic sequence of H. denitrificans 1NES1, facilitating further research into its genetic and metabolic pathways. Understanding the traits of this bacterium is crucial for exploring its role in denitrification processes, where it may participate in the nitrogen cycle, thereby impacting soil fertility and environmental health. Overall, H. denitrificans 1NES1 serves as an important organism within microbial ecology, particularly in contexts related to denitrification and nutrient cycling in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
Strain1NES1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Hyphomicrobium denitrificans 1NES1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomicrobium denitrificans 1NES1, complete sequence.

Gene Summary

Adenine Count

760389 bp

Thymine Count

774480 bp

Guanine Count

1149112 bp

Cytosine Count

1124706 bp

Genome Length

3808687 bp

Protein-coding Genes

3557 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorHYPDE_RS15365Not AvailableNegative3205502 - 320646735332.0
sarcosine oxidase subunit beta family proteinHYPDE_RS15370Not AvailablePositive3206583 - 320784245678.8
sarcosine oxidase subunit deltaHYPDE_RS15375Not AvailablePositive3207855 - 320815110957.7
sarcosine oxidase subunit alpha family proteinHYPDE_RS15380Not AvailablePositive3208148 - 3211132106153.0
sarcosine oxidase subunit gammaHYPDE_RS15385Not AvailablePositive3211125 - 321168219869.8
helix-turn-helix domain-containing proteinHYPDE_RS15390Not AvailablePositive3211812 - 321246523632.2
sulfatase-like hydrolase/transferaseHYPDE_RS15400Not AvailablePositive3212847 - 321458364950.0
fist n-terminal domain-containing proteinHYPDE_RS15405Not AvailablePositive3214700 - 321587242327.0
hybrid sensor histidine kinase/response regulatorHYPDE_RS15410Not AvailablePositive3215869 - 321723349836.9
response regulator transcription factorHYPDE_RS15415Not AvailableNegative3217237 - 321791424678.1

Displaying genes 3041 – 3050 of 3628 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.