Hyphomicrobium denitrificans 1NES1

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans 1NES1 is a Gram-negative bacterium characterized as aerobic and exhibiting a bacilli shape. This organism is non-motile, possessing flagella, which may indicate a capacity for other forms of movement or attachment in its environment, despite lacking the ability to swim independently. It thrives within a mesophilic temperature range, suitable for growth at moderate temperatures. H. denitrificans 1NES1 is classified as free-living, which suggests it can exist independently without reliance on a host. This feature allows it to inhabit various ecological niches, where it may contribute to nutrient cycling and ecosystem dynamics. The bacterium has a single replicon, indicating a relatively simple genomic organization that could reflect its ecological adaptability. The accession number NC_021172.1 provides a reference for the genomic sequence of H. denitrificans 1NES1, facilitating further research into its genetic and metabolic pathways. Understanding the traits of this bacterium is crucial for exploring its role in denitrification processes, where it may participate in the nitrogen cycle, thereby impacting soil fertility and environmental health. Overall, H. denitrificans 1NES1 serves as an important organism within microbial ecology, particularly in contexts related to denitrification and nutrient cycling in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
Strain1NES1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Hyphomicrobium denitrificans 1NES1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomicrobium denitrificans 1NES1, complete sequence.

Gene Summary

Adenine Count

760389 bp

Thymine Count

774480 bp

Guanine Count

1149112 bp

Cytosine Count

1124706 bp

Genome Length

3808687 bp

Protein-coding Genes

3557 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf465 domain-containing proteinHYPDE_RS13400Not AvailablePositive2795694 - 27959008160.08
ligase-associated dna damage response exonucleaseHYPDE_RS13405Not AvailablePositive2795958 - 279697736847.1
cisplatin damage response atp-dependent dna ligaseHYPDE_RS13410Not AvailablePositive2796980 - 279898073719.1
5-(carboxyamino)imidazole ribonucleotide mutaseHYPDE_RS13415Not AvailablePositive2799136 - 279963016938.7
5-(carboxyamino)imidazole ribonucleotide synthaseHYPDE_RS13420Not AvailablePositive2799642 - 280072739009.5
duf1398 domain-containing proteinHYPDE_RS13425Not AvailableNegative2800749 - 280115014328.0
marr family winged helix-turn-helix transcriptional regulatorHYPDE_RS13430Not AvailableNegative2801182 - 280164616787.2
30s ribosomal protein s21HYPDE_RS13435Not AvailablePositive2801882 - 280221711678.2
alpha/beta hydrolaseHYPDE_RS13440Not AvailableNegative2802287 - 280310829652.8
yiix/yebb-like n1pc/p60 family cysteine hydrolaseHYPDE_RS13445Not AvailableNegative2803164 - 280455552170.4

Displaying genes 2651 – 2660 of 3628 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.