Hyphomicrobium denitrificans 1NES1

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans 1NES1 is a Gram-negative bacterium characterized as aerobic and exhibiting a bacilli shape. This organism is non-motile, possessing flagella, which may indicate a capacity for other forms of movement or attachment in its environment, despite lacking the ability to swim independently. It thrives within a mesophilic temperature range, suitable for growth at moderate temperatures. H. denitrificans 1NES1 is classified as free-living, which suggests it can exist independently without reliance on a host. This feature allows it to inhabit various ecological niches, where it may contribute to nutrient cycling and ecosystem dynamics. The bacterium has a single replicon, indicating a relatively simple genomic organization that could reflect its ecological adaptability. The accession number NC_021172.1 provides a reference for the genomic sequence of H. denitrificans 1NES1, facilitating further research into its genetic and metabolic pathways. Understanding the traits of this bacterium is crucial for exploring its role in denitrification processes, where it may participate in the nitrogen cycle, thereby impacting soil fertility and environmental health. Overall, H. denitrificans 1NES1 serves as an important organism within microbial ecology, particularly in contexts related to denitrification and nutrient cycling in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
Strain1NES1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Hyphomicrobium denitrificans 1NES1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomicrobium denitrificans 1NES1, complete sequence.

Gene Summary

Adenine Count

760389 bp

Thymine Count

774480 bp

Guanine Count

1149112 bp

Cytosine Count

1124706 bp

Genome Length

3808687 bp

Protein-coding Genes

3557 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent clp protease adapter clpsHYPDE_RS12050Not AvailableNegative2512690 - 251305813800.6
d-alanyl-d-alanine carboxypeptidaseHYPDE_RS12060Not AvailablePositive2513726 - 251542059509.1
bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase putaHYPDE_RS12065Not AvailableNegative2515428 - 2518604115368.0
pantoate--beta-alanine ligaseHYPDE_RS12070Not AvailablePositive2518780 - 251964030635.6
dna topoisomerase iv subunit bHYPDE_RS12075Not AvailablePositive2519848 - 252181272342.3
fatty acid desaturase family proteinHYPDE_RS12080Not AvailableNegative2521951 - 252335153072.5
aquaporinHYPDE_RS12085Not AvailablePositive2523675 - 252434622577.0
dead/deah box helicaseHYPDE_RS12090Not AvailablePositive2524676 - 252627458396.2
tfox/sxy family proteinHYPDE_RS12095Not AvailableNegative2526281 - 252669115133.0
iron-sulfur cluster assembly accessory proteinHYPDE_RS12100Not AvailableNegative2526712 - 252709813697.7

Displaying genes 2381 – 2390 of 3628 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.