Hyphomicrobium denitrificans 1NES1

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans 1NES1 is a Gram-negative bacterium characterized as aerobic and exhibiting a bacilli shape. This organism is non-motile, possessing flagella, which may indicate a capacity for other forms of movement or attachment in its environment, despite lacking the ability to swim independently. It thrives within a mesophilic temperature range, suitable for growth at moderate temperatures. H. denitrificans 1NES1 is classified as free-living, which suggests it can exist independently without reliance on a host. This feature allows it to inhabit various ecological niches, where it may contribute to nutrient cycling and ecosystem dynamics. The bacterium has a single replicon, indicating a relatively simple genomic organization that could reflect its ecological adaptability. The accession number NC_021172.1 provides a reference for the genomic sequence of H. denitrificans 1NES1, facilitating further research into its genetic and metabolic pathways. Understanding the traits of this bacterium is crucial for exploring its role in denitrification processes, where it may participate in the nitrogen cycle, thereby impacting soil fertility and environmental health. Overall, H. denitrificans 1NES1 serves as an important organism within microbial ecology, particularly in contexts related to denitrification and nutrient cycling in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
Strain1NES1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Hyphomicrobium denitrificans 1NES1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomicrobium denitrificans 1NES1, complete sequence.

Gene Summary

Adenine Count

760389 bp

Thymine Count

774480 bp

Guanine Count

1149112 bp

Cytosine Count

1124706 bp

Genome Length

3808687 bp

Protein-coding Genes

3557 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
threonine-phosphate decarboxylase cobdHYPDE_RS11755Not AvailablePositive2451491 - 245254638073.6
duf1194 domain-containing proteinHYPDE_RS11760Not AvailableNegative2452777 - 245361030418.4
pqq-dependent methanol/ethanol family dehydrogenaseHYPDE_RS11765Not AvailableNegative2453750 - 245551363469.1
quinoprotein relay system zinc metallohydrolase 1HYPDE_RS11770Not AvailableNegative2455710 - 245667535267.1
quinoprotein dehydrogenase-associated soxyz-like carrierHYPDE_RS11775Not AvailableNegative2456672 - 245750230304.3
substrate-binding periplasmic proteinHYPDE_RS11780Not AvailableNegative2457519 - 245840932277.9
cytochrome c-550 pedfHYPDE_RS11785Not AvailableNegative2458418 - 245882814843.6
pqq-dependent catabolism-associated beta-propeller proteinHYPDE_RS11790Not AvailablePositive2459104 - 246012937143.5
rhodanese-like domain-containing proteinHYPDE_RS11795Not AvailablePositive2460134 - 246072721654.8
type ii toxin-antitoxin system pard family antitoxinHYPDE_RS11800Not AvailablePositive2461202 - 246148310446.6

Displaying genes 2321 – 2330 of 3628 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.