Ruminococcus sp. SR1/5

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. SR1/5 is a Gram-positive bacterium characterized by its cocci shape. This organism possesses flagella, which suggests it has the capability for motility. It has a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and adaptation. The accession number for Ruminococcus sp. SR1/5 is NC_021014.1, which provides a reference for its genomic data. The presence of flagella in this species could imply an ecological role in navigating its environment, potentially affecting its interactions with other microorganisms and its ability to colonize specific niches. Understanding the traits of Ruminococcus sp. SR1/5 enhances our knowledge of its biological functions and ecological contributions, particularly within the gastrointestinal microbiota. As a member of the Ruminococcus genus, it may play a role in the fermentation of complex carbohydrates, contributing to the overall metabolic processes in its habitat. The flagellar motility could also aid in its competitive advantage, allowing it to reach substrates and resources that are crucial for its survival and proliferation in the microbial community.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. SR1/5
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. SR1/5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. SR1/5, complete sequence.

Gene Summary

Adenine Count

995952 bp

Thymine Count

964047 bp

Guanine Count

792213 bp

Cytosine Count

759400 bp

Genome Length

3545606 bp

Protein-coding Genes

3522 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
b12-binding domain-containing radical sam proteinCK1_RS00315Not AvailablePositive57406 - 5909165731.9
air synthase-related proteinCK1_RS00320Not AvailablePositive59251 - 5980520115.0
trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trmlCK1_RS00325Not AvailablePositive59877 - 6037719049.8
sensor histidine kinaseCK1_RS00330Not AvailableNegative60479 - 6188853287.2
response regulator transcription factorCK1_RS00335Not AvailableNegative61885 - 6258626742.4
endonuclease muts2CK1_RS00340Not AvailableNegative62602 - 6498388088.8
3'-5' exoribonuclease yham family proteinCK1_RS00345Not AvailablePositive65290 - 6623735422.3
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdCK1_RS00350Not AvailablePositive66241 - 6760250968.1
hypothetical proteinCK1_RS00355Not AvailablePositive67883 - 6830216518.6
hypothetical proteinCK1_RS00360Not AvailablePositive68302 - 6950746276.3

Displaying genes 241 – 250 of 3660 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

360 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 360 metabolites

Health Effects

No health effects information available for this bacterium.