Helicobacter pylori OK113

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori OK113 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella. It is notable for its habitat, which is host-associated, indicating a relationship with living organisms. This bacterium typically exists as single cells rather than in clusters or arrangements. The optimal growth temperature for H. pylori OK113 is 37°C, placing it within the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. H. pylori OK113 has a unique cellular structure, possessing two membranes and a single replicon, which is indicative of its genetic organization. Despite being free-living, this bacterium's relationship with hosts is significant as it is commonly associated with the human stomach, where it can influence gastric health. The presence of flagella aids in its mobility, although it is described as not being mobile in the same context as other motile organisms. Overall, the traits of H. pylori OK113 underscore its specialized adaptation to a host-associated environment, offering insights into its role in human health and disease, particularly regarding gastrointestinal conditions. The accession number for further genomic information is NC_020508.1.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainOK113

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori OK113
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori OK113


Gene Summary

Adenine Count

493576 bp

Thymine Count

496924 bp

Guanine Count

311702 bp

Cytosine Count

314415 bp

Genome Length

1616617 bp

Protein-coding Genes

1517 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinyl-diaminopimelate desuccinylaseHPOK113_RS01160Not AvailableNegative224714 - 22586542262.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgHPOK113_RS01165Not AvailableNegative225876 - 22774169738.1
slc13 family permeaseHPOK113_RS01170Not AvailablePositive227837 - 22949559899.2
phosphatidate cytidylyltransferaseHPOK113_RS01175Not AvailablePositive229516 - 23031628846.1
1-deoxy-d-xylulose-5-phosphate reductoisomeraseHPOK113_RS01180Not AvailablePositive230317 - 23141740232.4
ybhb/ybcl family raf kinase inhibitor-like proteinHPOK113_RS01185Not AvailableNegative231598 - 23214920689.9
helix-turn-helix domain-containing proteinHPOK113_RS01190Not AvailablePositive232294 - 23275517870.8
nifs family cysteine desulfuraseHPOK113_RS01195Not AvailablePositive232926 - 23408942520.1
iron-sulfur cluster assembly scaffold protein nifuHPOK113_RS01200Not AvailablePositive234111 - 23509136340.8
hypothetical proteinHPOK113_RS01205Not AvailablePositive235246 - 2354818897.53

Displaying genes 221 – 230 of 1562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.