Helicobacter pylori OK113

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori OK113 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella. It is notable for its habitat, which is host-associated, indicating a relationship with living organisms. This bacterium typically exists as single cells rather than in clusters or arrangements. The optimal growth temperature for H. pylori OK113 is 37°C, placing it within the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. H. pylori OK113 has a unique cellular structure, possessing two membranes and a single replicon, which is indicative of its genetic organization. Despite being free-living, this bacterium's relationship with hosts is significant as it is commonly associated with the human stomach, where it can influence gastric health. The presence of flagella aids in its mobility, although it is described as not being mobile in the same context as other motile organisms. Overall, the traits of H. pylori OK113 underscore its specialized adaptation to a host-associated environment, offering insights into its role in human health and disease, particularly regarding gastrointestinal conditions. The accession number for further genomic information is NC_020508.1.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainOK113

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori OK113
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori OK113, complete sequence.

Gene Summary

Adenine Count

493576 bp

Thymine Count

496924 bp

Guanine Count

311702 bp

Cytosine Count

314415 bp

Genome Length

1616617 bp

Protein-coding Genes

1517 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionyl-trna formyltransferaseHPOK113_RS05620Not AvailableNegative1171062 - 117197333682.7
trlf family aaa-like atpaseHPOK113_RS05625Not AvailableNegative1171975 - 1174602102709.0
duf2130 domain-containing proteinHPOK113_RS05630Not AvailableNegative1174645 - 117594650649.3
16s ribosomal rnaNot AvailableNot AvailablePositive1176746 - 1178249Not Available
hypothetical proteinHPOK113_RS07870Not AvailableNegative1178986 - 117966124174.5
50s ribosomal protein l19HPOK113_RS05645Not AvailableNegative1180004 - 118036013596.6
trna (guanosine(37)-n1)-methyltransferase trmdHPOK113_RS05650Not AvailableNegative1180382 - 118107125982.5
ribosome maturation factor rimmHPOK113_RS05655Not AvailableNegative1181072 - 118162620832.4
kh domain-containing proteinHPOK113_RS05660Not AvailableNegative1181627 - 118197412680.3
30s ribosomal protein s16HPOK113_RS05665Not AvailableNegative1181991 - 11822218972.0

Displaying genes 1121 – 1130 of 1562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.