Helicobacter pylori OK113

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori OK113 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella. It is notable for its habitat, which is host-associated, indicating a relationship with living organisms. This bacterium typically exists as single cells rather than in clusters or arrangements. The optimal growth temperature for H. pylori OK113 is 37°C, placing it within the mesophilic temperature range, which is conducive to its survival in warm-blooded hosts. H. pylori OK113 has a unique cellular structure, possessing two membranes and a single replicon, which is indicative of its genetic organization. Despite being free-living, this bacterium's relationship with hosts is significant as it is commonly associated with the human stomach, where it can influence gastric health. The presence of flagella aids in its mobility, although it is described as not being mobile in the same context as other motile organisms. Overall, the traits of H. pylori OK113 underscore its specialized adaptation to a host-associated environment, offering insights into its role in human health and disease, particularly regarding gastrointestinal conditions. The accession number for further genomic information is NC_020508.1.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainOK113

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori OK113
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori OK113, complete sequence.

Gene Summary

Adenine Count

493576 bp

Thymine Count

496924 bp

Guanine Count

311702 bp

Cytosine Count

314415 bp

Genome Length

1616617 bp

Protein-coding Genes

1517 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux rnd transporter periplasmic adaptor subunitHPOK113_RS04970Not AvailableNegative1037119 - 103819839617.3
tolc family proteinHPOK113_RS04975Not AvailableNegative1038195 - 103949049847.4
glycine--trna ligase subunit betaHPOK113_RS04980Not AvailableNegative1039480 - 104158280393.5
hypothetical proteinHPOK113_RS04985Not AvailablePositive1041694 - 104276139829.3
2,3-bisphosphoglycerate-independent phosphoglycerate mutaseHPOK113_RS04990Not AvailablePositive1042774 - 104424954846.2
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcHPOK113_RS04995Not AvailablePositive1044264 - 104454510646.9
adenosylmethionine--8-amino-7-oxononanoate transaminaseHPOK113_RS05000Not AvailableNegative1044618 - 104592849643.1
peptidylprolyl isomeraseHPOK113_RS05005Not AvailablePositive1046058 - 104752156465.7
cell division protein ftsaHPOK113_RS05010Not AvailablePositive1047521 - 104901755069.6
cell division protein ftszHPOK113_RS05015Not AvailablePositive1049152 - 105030940927.8

Displaying genes 991 – 1000 of 1562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.