Nonlabens dokdonensis DSW-6

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Nonlabens

Description

Nonlabens dokdonensis DSW-6 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This species is non-motile and does not form spores, which may influence its ecological interactions and survival strategies in its natural habitat. The optimal growth temperature for N. dokdonensis DSW-6 is 25°C, placing it within the mesophilic temperature range, indicating its preference for moderate environmental conditions. The genetic makeup of Nonlabens dokdonensis DSW-6 includes a single replicon, which is relevant for understanding its genetic stability and replication processes. This trait can be significant when considering the bacterium's adaptability in various environments, especially when faced with changes in nutrient availability or other stresses. The accession number for N. dokdonensis DSW-6 is NC_020156.1, which serves as a reference for genomic studies and further research into its genetic characteristics. Understanding the genomic features of this bacterium can provide insights into its metabolic capabilities and ecological roles. In summary, the combination of its Gram-negative cell wall structure, aerobic metabolism, mesophilic nature, and genetic characteristics suggests that Nonlabens dokdonensis DSW-6 may play a specific role in the decomposition processes within its ecosystem, contributing to nutrient cycling and the maintenance of microbial diversity in its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusNonlabens
SpeciesNonlabens dokdonensis
StrainDSW-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nonlabens dokdonensis DSW-6, complete sequence.

Gene Summary

Adenine Count

1271809 bp

Thymine Count

1260359 bp

Guanine Count

691910 bp

Cytosine Count

690554 bp

Genome Length

3914632 bp

Protein-coding Genes

3440 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeDDD_RS16555Not AvailableNegative3758723 - 375997946261.7
plp-dependent cysteine synthase family proteinDDD_RS16560Not AvailableNegative3760188 - 376122838375.3
s9 family peptidaseDDD_RS16565Not AvailableNegative3761352 - 376340379482.3
ybab/ebfc family nucleoid-associated proteinDDD_RS16570Not AvailablePositive3763552 - 376387511813.3
pqq-dependent sugar dehydrogenaseDDD_RS17425Not AvailableNegative3763983 - 3768161151227.0
geved domain-containing proteinDDD_RS16580Not AvailableNegative3768237 - 3773951206638.0
lysm peptidoglycan-binding domain-containing proteinDDD_RS16585Not AvailableNegative3774240 - 377461713995.7
hypothetical proteinDDD_RS18070Not AvailablePositive3774645 - 37747825267.56
yebc/pmpr family dna-binding transcriptional regulatorDDD_RS16590Not AvailableNegative3774801 - 377554428016.7
hypothetical proteinDDD_RS16595Not AvailableNegative3775659 - 377603614320.5

Displaying genes 3371 – 3380 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.