Nonlabens dokdonensis DSW-6

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Nonlabens

Description

Nonlabens dokdonensis DSW-6 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This species is non-motile and does not form spores, which may influence its ecological interactions and survival strategies in its natural habitat. The optimal growth temperature for N. dokdonensis DSW-6 is 25°C, placing it within the mesophilic temperature range, indicating its preference for moderate environmental conditions. The genetic makeup of Nonlabens dokdonensis DSW-6 includes a single replicon, which is relevant for understanding its genetic stability and replication processes. This trait can be significant when considering the bacterium's adaptability in various environments, especially when faced with changes in nutrient availability or other stresses. The accession number for N. dokdonensis DSW-6 is NC_020156.1, which serves as a reference for genomic studies and further research into its genetic characteristics. Understanding the genomic features of this bacterium can provide insights into its metabolic capabilities and ecological roles. In summary, the combination of its Gram-negative cell wall structure, aerobic metabolism, mesophilic nature, and genetic characteristics suggests that Nonlabens dokdonensis DSW-6 may play a specific role in the decomposition processes within its ecosystem, contributing to nutrient cycling and the maintenance of microbial diversity in its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusNonlabens
SpeciesNonlabens dokdonensis
StrainDSW-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nonlabens dokdonensis DSW-6, complete sequence.

Gene Summary

Adenine Count

1271809 bp

Thymine Count

1260359 bp

Guanine Count

691910 bp

Cytosine Count

690554 bp

Genome Length

3914632 bp

Protein-coding Genes

3440 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
t9ss type a sorting domain-containing proteinDDD_RS14090Not AvailableNegative3202306 - 320329236027.6
m43 family zinc metalloproteaseDDD_RS17375Not AvailableNegative3203454 - 320585084449.1
dna topoisomerase iv subunit bDDD_RS14100Not AvailablePositive3206364 - 320821770143.9
dna gyrase/topoisomerase iv subunit aDDD_RS14105Not AvailablePositive3208348 - 3211020101286.0
large conductance mechanosensitive channel protein msclDDD_RS14110Not AvailablePositive3211136 - 321157316321.2
hypothetical proteinDDD_RS14115Not AvailableNegative3211656 - 321202714472.0
helix-turn-helix domain-containing proteinDDD_RS14120Not AvailableNegative3212065 - 321252016883.8
m14 family zinc carboxypeptidaseDDD_RS14125Not AvailablePositive3212859 - 321399542785.9
lrp/asnc family transcriptional regulatorDDD_RS14130Not AvailablePositive3214076 - 321454917886.9
dinb family proteinDDD_RS14135Not AvailablePositive3214549 - 321507019722.3

Displaying genes 2871 – 2880 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.