Nonlabens dokdonensis DSW-6

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Nonlabens

Description

Nonlabens dokdonensis DSW-6 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This species is non-motile and does not form spores, which may influence its ecological interactions and survival strategies in its natural habitat. The optimal growth temperature for N. dokdonensis DSW-6 is 25°C, placing it within the mesophilic temperature range, indicating its preference for moderate environmental conditions. The genetic makeup of Nonlabens dokdonensis DSW-6 includes a single replicon, which is relevant for understanding its genetic stability and replication processes. This trait can be significant when considering the bacterium's adaptability in various environments, especially when faced with changes in nutrient availability or other stresses. The accession number for N. dokdonensis DSW-6 is NC_020156.1, which serves as a reference for genomic studies and further research into its genetic characteristics. Understanding the genomic features of this bacterium can provide insights into its metabolic capabilities and ecological roles. In summary, the combination of its Gram-negative cell wall structure, aerobic metabolism, mesophilic nature, and genetic characteristics suggests that Nonlabens dokdonensis DSW-6 may play a specific role in the decomposition processes within its ecosystem, contributing to nutrient cycling and the maintenance of microbial diversity in its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusNonlabens
SpeciesNonlabens dokdonensis
StrainDSW-6

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nonlabens dokdonensis DSW-6, complete sequence.

Gene Summary

Adenine Count

1271809 bp

Thymine Count

1260359 bp

Guanine Count

691910 bp

Cytosine Count

690554 bp

Genome Length

3914632 bp

Protein-coding Genes

3440 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-aminoacyl-trna deacylaseDDD_RS09050Not AvailablePositive2059120 - 205957516824.3
duf3857 domain-containing proteinDDD_RS09055Not AvailablePositive2059640 - 206154472096.0
duf3857 domain-containing proteinDDD_RS09060Not AvailablePositive2061541 - 206350874942.3
nucleotide pyrophosphohydrolaseDDD_RS09065Not AvailablePositive2063510 - 206383912619.9
3-phosphoshikimate 1-carboxyvinyltransferaseDDD_RS09070Not AvailablePositive2063843 - 206509346190.5
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaDDD_RS09075Not AvailablePositive2065161 - 206621340071.6
hypothetical proteinDDD_RS09080Not AvailableNegative2066312 - 206694123569.4
ribulose-phosphate 3-epimeraseDDD_RS09085Not AvailablePositive2067143 - 206779924005.2
marc family proteinDDD_RS09090Not AvailablePositive2067970 - 206857221592.4
hypothetical proteinDDD_RS09095Not AvailablePositive2068575 - 20687757328.44

Displaying genes 1841 – 1850 of 3491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.