Synechococcus sp. PCC 6312

Gram-negative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. PCC 6312 is a freshwater cyanobacterium characterized as gram-negative and possessing flagella. This organism has two replicons, which is indicative of its genetic structure. The presence of flagella suggests that it is motile, allowing it to navigate its aquatic environment effectively. The habitat of Synechococcus sp. PCC 6312 is significant, as freshwater ecosystems are vital for biodiversity and serve as crucial resources for various organisms, including bacteria, plants, and animals. The adaptability of cyanobacteria like Synechococcus in these environments highlights their ecological importance, especially in nutrient cycling and primary production. The genetic information for Synechococcus sp. PCC 6312 is accessible through the following accession numbers: NC_019680.1 and NC_019681.1. These genetic resources can be instrumental for researchers studying the metabolic pathways and ecological roles of this cyanobacterium. In summary, Synechococcus sp. PCC 6312 exemplifies a motile, gram-negative cyanobacterium found in freshwater habitats, contributing to ecological processes such as nutrient cycling and primary production. Its genetic makeup, represented by its two replicons, provides insights into its adaptability and function within its ecosystem.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. PCC 6312
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Synechococcus sp. PCC 6312
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Synechococcus sp. PCC 6312 plasmid pSYN6312.01, complete sequence.

Gene Summary

Adenine Count

6280 bp

Thymine Count

6127 bp

Guanine Count

5558 bp

Cytosine Count

5258 bp

Genome Length

23223 bp

Protein-coding Genes

34 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dinb family proteinSYN6312_RS20990Not AvailableNegative1872997 - 18730983653.37
threonine--trna ligaseSYN6312_RS09125Not AvailableNegative1873191 - 187503869664.6
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseSYN6312_RS09130Not AvailableNegative1875098 - 187587127023.6
polyphosphate kinase 2SYN6312_RS09135Not AvailableNegative1875946 - 187683634276.3
pas domain-containing proteinSYN6312_RS18285Not AvailablePositive1877144 - 1880956143924.0
pap/fibrillin family proteinSYN6312_RS09145Not AvailablePositive1881039 - 188162621620.3
ornithine carbamoyltransferaseSYN6312_RS09150Not AvailablePositive1881717 - 188263132794.4
duf1517 domain-containing proteinSYN6312_RS09155Not AvailablePositive1882800 - 188375333730.5
class i sam-dependent methyltransferaseSYN6312_RS09160Not AvailableNegative1883774 - 188441224944.9
glycosyltransferaseSYN6312_RS09165Not AvailableNegative1884440 - 188558542785.1

Displaying genes 1901 – 1910 of 3727 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.