Synechococcus sp. PCC 6312

Gram-negative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. PCC 6312 is a freshwater cyanobacterium characterized as gram-negative and possessing flagella. This organism has two replicons, which is indicative of its genetic structure. The presence of flagella suggests that it is motile, allowing it to navigate its aquatic environment effectively. The habitat of Synechococcus sp. PCC 6312 is significant, as freshwater ecosystems are vital for biodiversity and serve as crucial resources for various organisms, including bacteria, plants, and animals. The adaptability of cyanobacteria like Synechococcus in these environments highlights their ecological importance, especially in nutrient cycling and primary production. The genetic information for Synechococcus sp. PCC 6312 is accessible through the following accession numbers: NC_019680.1 and NC_019681.1. These genetic resources can be instrumental for researchers studying the metabolic pathways and ecological roles of this cyanobacterium. In summary, Synechococcus sp. PCC 6312 exemplifies a motile, gram-negative cyanobacterium found in freshwater habitats, contributing to ecological processes such as nutrient cycling and primary production. Its genetic makeup, represented by its two replicons, provides insights into its adaptability and function within its ecosystem.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. PCC 6312
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Synechococcus sp. PCC 6312
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatFresh water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Synechococcus sp. PCC 6312 plasmid pSYN6312.01, complete sequence.

Gene Summary

Adenine Count

6280 bp

Thymine Count

6127 bp

Guanine Count

5558 bp

Cytosine Count

5258 bp

Genome Length

23223 bp

Protein-coding Genes

34 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system vapc family toxinSYN6312_RS05790Not AvailableNegative1158709 - 115912815580.6
hypothetical proteinSYN6312_RS05795Not AvailableNegative1159125 - 11593889859.7
type i-myxan crispr-associated protein cas6/cmx6SYN6312_RS05800Not AvailableNegative1159409 - 116005923438.0
hypothetical proteinSYN6312_RS05805Not AvailableNegative1160280 - 11604596806.07
hypothetical proteinSYN6312_RS19715Not AvailableNegative1160779 - 11609526470.74
duf433 domain-containing proteinSYN6312_RS05810Not AvailableNegative1160953 - 116127012171.5
duf2442 domain-containing proteinSYN6312_RS05815Not AvailableNegative1161339 - 116161710396.3
helix-turn-helix transcriptional regulatorSYN6312_RS05820Not AvailableNegative1161660 - 116264638170.8
glycogen synthase glgaSYN6312_RS05825Not AvailableNegative1162847 - 116427454141.2
rna polymerase sigma factor, rpod/siga familySYN6312_RS05830Not AvailableNegative1164406 - 116536236208.6

Displaying genes 1211 – 1220 of 3727 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.