Escherichia coli O104:H4 str. 2011C-3493

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O104:H4 str. 2011C-3493 is a Gram-negative, rod-shaped bacterium known for its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is characterized by its mobility, attributed to the presence of flagella, and typically exists in pairs or singles within its habitat, which is host-associated. The optimal growth temperature for E. coli O104:H4 str. 2011C-3493 is 37°C, situating it within a mesophilic temperature range. Its cellular structure includes two membranes and four replicons, indicative of a complex genomic architecture that may contribute to its adaptability and survival in various conditions. As a free-living organism, E. coli O104:H4 str. 2011C-3493 plays a significant role in the microbiota of its host, where it can interact with other microbial species. The presence of this strain in specific environments may influence ecological dynamics, including nutrient cycling and microbial community structure. The strain's adaptability to different oxygen levels and its mobility may enhance its ability to colonize diverse niches within the host, potentially impacting host health and disease states. Accession numbers for this strain include NC_018658.1, NC_018659.1, NC_018660.1, and NC_018666.1, which can be used for further genomic studies and exploration of its characteristics. Overall, E. coli O104:H4 str. 2011C-3493 exemplifies the complexity of microbial life and its interactions within ecological systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO104:H4 2011C-3493

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O104:H4 str. 2011C-3493
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O104:H4 str. 2011C-3493, complete sequence.

Gene Summary

Adenine Count

1298006 bp

Thymine Count

1300875 bp

Guanine Count

1338990 bp

Cytosine Count

1335226 bp

Genome Length

5273097 bp

Protein-coding Genes

4655 genes

Non-Coding Genes

556 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formyltetrahydrofolate deformylaseO3K_RS14555Not AvailablePositive2964863 - 296570531922.6
Trna-tyrNot AvailableNot AvailablePositive2965865 - 2965949Not Available
Trna-tyrNot AvailableNot AvailablePositive2965984 - 2966068Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive2966115 - 2966246Not Available
respiratory nitrate reductase subunit gammaO3K_RS14575Not AvailableNegative2966430 - 296710725484.9
nitrate reductase molybdenum cofactor assembly chaperoneO3K_RS14580Not AvailableNegative2967107 - 296781726444.3
nitrate reductase subunit betaO3K_RS14585Not AvailableNegative2967814 - 296935258083.6
nitrate reductase subunit alphaO3K_RS14590Not AvailableNegative2969349 - 2973092140466.0
nitrate transporter narkO3K_RS14595Not AvailableNegative2973608 - 297499949696.3
nitrate/nitrite two-component system sensor histidine kinase narxO3K_RS14600Not AvailablePositive2975338 - 297713467088.0

Displaying genes 3101 – 3110 of 5397 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.